View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_26 (Length: 247)
Name: NF0707_1D_low_26
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 24898098 - 24897869
Alignment:
| Q |
6 |
atttgtgtcacttgtcatcaatcaaaagactttcactctatcctattttaatctatctcctcctatttggctctggttagccaaagaacaataatatttc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24898098 |
atttgtgtcacttgtcatcaatcaaaagactttcactctatcctattttaatctatcgcctcctatttggctctggttagccaaagaacaataatatttc |
24897999 |
T |
|
| Q |
106 |
agtttagcagaaagacaatattatcgtcttctacatttatgacaagtgnnnnnnnctccaatttatttcttaaaagaaatagttacagcattaacttctt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24897998 |
agtttagcagaaagacaatattatcgtcttctacatttatgacaagtgtttttttctccaatttatttcttaaaagaaatagttacagcattaacttctt |
24897899 |
T |
|
| Q |
206 |
ttagattgtgactacatgtcttttttatgt |
235 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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| T |
24897898 |
ttagattgtgactacatgtctttttaatgt |
24897869 |
T |
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