View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_1D_low_27 (Length: 246)

Name: NF0707_1D_low_27
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_1D_low_27
NF0707_1D_low_27
[»] chr2 (4 HSPs)
chr2 (39-237)||(31658781-31658979)
chr2 (134-232)||(31657244-31657342)
chr2 (44-170)||(31650298-31650430)
chr2 (54-98)||(31657390-31657434)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 31658781 - 31658979
Alignment:
39 gaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgt 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31658781 gaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgt 31658880  T
139 tgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgtccat 237  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
31658881 tgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccat 31658979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 31657342 - 31657244
Alignment:
134 aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatg 232  Q
    |||||||||||| ||||| |||||||||||||||||||   |  ||| |||||||||||| ||||| ||||||||  || | |||||||||||||||||    
31657342 aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatg 31657244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 31650430 - 31650298
Alignment:
44 atcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaacgagttttcttctttaattggaatgttg 140  Q
    ||||| ||| ||||||||||| |||||  || ||||||||||||||| |||||||   ||||||||| |||| |  | ||||| |||| ||| |||||||    
31650430 atcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggatattcttgtttatttgaaatgttg 31650331  T
141 ---ttatcaaaactgagtaatatagaagagtca 170  Q
       ||||| ||||| |||||||| |||||||||    
31650330 ttattatcgaaactaagtaatattgaagagtca 31650298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
54 atctcttccttaggatcctctattgtagatgcaagaaatggcaat 98  Q
    ||||||||||| || |||||| ||||||||||||||| |||||||    
31657434 atctcttccttgggttcctcttttgtagatgcaagaagtggcaat 31657390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University