View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_27 (Length: 246)
Name: NF0707_1D_low_27
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0707_1D_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 31658781 - 31658979
Alignment:
Q |
39 |
gaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgt |
138 |
Q |
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T |
31658781 |
gaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgt |
31658880 |
T |
 |
Q |
139 |
tgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgtccat |
237 |
Q |
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T |
31658881 |
tgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccat |
31658979 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 31657342 - 31657244
Alignment:
Q |
134 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatg |
232 |
Q |
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T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatg |
31657244 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 31650430 - 31650298
Alignment:
Q |
44 |
atcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaacgagttttcttctttaattggaatgttg |
140 |
Q |
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T |
31650430 |
atcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggatattcttgtttatttgaaatgttg |
31650331 |
T |
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Q |
141 |
---ttatcaaaactgagtaatatagaagagtca |
170 |
Q |
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T |
31650330 |
ttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
Q |
54 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
98 |
Q |
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T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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