View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_28 (Length: 246)
Name: NF0707_1D_low_28
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 26267962 - 26267772
Alignment:
| Q |
18 |
gacatcgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatttactattcct |
117 |
Q |
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| T |
26267962 |
gacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatttactattcct |
26267863 |
T |
|
| Q |
118 |
aatttaagtttgagaggctatgaagtaattgataatatcaaagaagagctagaaaagaaagatctcgctgtagtttcttgtgctgatgtcc |
208 |
Q |
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| T |
26267862 |
aatttaagtttgagaggttacgaagtaattgataacatcaaagaagagctagaaaagaaagatcccgatgtggtttcttgtgctgatgtcc |
26267772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 26264680 - 26264557
Alignment:
| Q |
83 |
tgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataatatcaaagaagagctagaaaagaaagatct |
182 |
Q |
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|||||||||||| ||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| ||| |||| |||| |||||||||||||| ||| |
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| T |
26264680 |
tgtagtagttcatgctcaagccatttactgctcctaatttgagtttaagaggctatgaagtaattgttaacatcagagaatagctagaaaagaaatgtct |
26264581 |
T |
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| Q |
183 |
cgctgtagtttcttgtgctgatgt |
206 |
Q |
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| T |
26264580 |
tggtgtggtttcgtgtgctgatgt |
26264557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 26265388 - 26265338
Alignment:
| Q |
24 |
gatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
74 |
Q |
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| T |
26265388 |
gatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
26265338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 23574383 - 23574570
Alignment:
| Q |
18 |
gacatcgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatttactattcct |
117 |
Q |
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||||| ||||||||||||| |||||| || |||||||||||||| |||||||||| | | || ||||||||| ||| ||||||| ||||| |||| |
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| T |
23574383 |
gacattgatttgtttcaaa-ttgagagtaataaacggcttgagcgtgaactactacggctaaacatgcagtagttcatgctcaagtcatgtactactcct |
23574481 |
T |
|
| Q |
118 |
aatttaagtttgagaggctatgaagtaattgataatatcaaagaagagctagaaaagaaagatctcgctgtagtttcttgtgctgatgt |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| |||||||||| |||||| |
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| T |
23574482 |
aatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaatgtcccaatgtggtttcttgtgttgatgt |
23574570 |
T |
|
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