View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_3 (Length: 466)
Name: NF0707_1D_low_3
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_3 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Original strand, 3207931 - 3208382
Alignment:
| Q |
15 |
ggacatcacattgaggtacctgaaattatgttaaacgatgatgtactattgtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagta |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3207931 |
ggacatgacattgaggtacctgaaattatgttaaacgatgatgtactattgtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagta |
3208030 |
T |
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| Q |
115 |
tgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaa |
214 |
Q |
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| T |
3208031 |
tgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaa |
3208130 |
T |
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| Q |
215 |
taaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttagaccagcagagtaacttacatgcacagcaggtagaacatgaacatca |
314 |
Q |
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| T |
3208131 |
taaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaacttacatgcacagcaggtagaacatgaacatca |
3208230 |
T |
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| Q |
315 |
gcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttgacctttggctactcttccaacaaacc |
414 |
Q |
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| T |
3208231 |
gcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttgacctttggctactcttccaacaaacc |
3208330 |
T |
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| Q |
415 |
caccttgctcacacacaactatttttcccttaacatcaaccttcttcatggc |
466 |
Q |
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| T |
3208331 |
caccttgctcacacacaactatttttcccttaacatcaaccttcttcatggc |
3208382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 465
Target Start/End: Original strand, 3201964 - 3202407
Alignment:
| Q |
22 |
acattgaggtacctgaaattatgttaaacgatgatgtactattgtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctgg |
121 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||| |
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| T |
3201964 |
acatcgaggtacctgcaattatgttaaacgatgatgtactattgtctaatgatataggccatcctgctagaatgttcaatccaggtccaattatgtctgg |
3202063 |
T |
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| Q |
122 |
tttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaatt |
221 |
Q |
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| T |
3202064 |
tttcagaattccagggcttgttttgcttggacctcttgatgaaaatgaagcaacttgaggggaaagtggatttccaataacagttcctttgaataaaatt |
3202163 |
T |
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| Q |
222 |
gtggccattggtgtggaagttgaatttatataatcttggatgtttagaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattg |
321 |
Q |
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| T |
3202164 |
gtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattg |
3202263 |
T |
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| Q |
322 |
gattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttg |
421 |
Q |
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|||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||| |||| |
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| T |
3202264 |
gattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttg |
3202363 |
T |
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| Q |
422 |
ctcacacacaactatttttcccttaacatcaaccttcttcatgg |
465 |
Q |
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| T |
3202364 |
ctcacacactactacctttcccttaacatcaacattctccatgg |
3202407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 22 - 465
Target Start/End: Original strand, 3215874 - 3216320
Alignment:
| Q |
22 |
acattgaggtacctgaaattatgttaaacgatgatgtactattgtctaatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctgg |
121 |
Q |
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||||||||||||||||||| ||||| | | || | || | ||||| ||||||| | ||||| | || |||||||||| |||||| |||| ||||||||| |
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| T |
3215874 |
acattgaggtacctgaaatgatgttgtatggtggtatattgttgtccaatgatacatgccatgctgctagaatgttcactccaggtccaattatgtctgg |
3215973 |
T |
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| Q |
122 |
tttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaatt |
221 |
Q |
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| T |
3215974 |
tttcagaattcctgggctttcttggtttggtcctcttgatgaaaagtaagctacttgaggggcattgggatttccaataacagttccattgaataaaatc |
3216073 |
T |
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| Q |
222 |
gtggccattggtgtggaagttgaatttatataatcttggatgtttagaccagcagagtaacttacatgcacagcaggtaga---acatgaacatcagcaa |
318 |
Q |
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|||||||||||||| |||||||| ||||||||||||| |||| || ||||||||||||||||||| | ||||||||||| | |||||||| | |
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| T |
3216074 |
gtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacaagtgcagcaggtagattgtcttgaacatcggatt |
3216173 |
T |
|
| Q |
319 |
ttggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttgacctttggctactcttccaacaaacccacc |
418 |
Q |
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|||||| ||| ||| | || ||| |||| || ||||| |||| ||||| || ||||||||||||||| |||| ||| || | ||||| ||||| |
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| T |
3216174 |
ttggatcaaaaccttgaagtttactattcatgaggatcatggcagatccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccacc |
3216273 |
T |
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| Q |
419 |
ttgctcacacacaactatttttcccttaacatcaaccttcttcatgg |
465 |
Q |
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| T |
3216274 |
ttcctcacacaaaactacctttcccttaacatcaatgttcttcatgg |
3216320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 3220886 - 3220947
Alignment:
| Q |
114 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
175 |
Q |
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| T |
3220886 |
atgtctggtttaagaattccaggactttcttggcttggtcctcttgaagaaaatgaaacaac |
3220947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 3178922 - 3178861
Alignment:
| Q |
114 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
175 |
Q |
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||||||||||| ||||||||||| ||| || |||||| |||||||| ||||||||| |||| |
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| T |
3178922 |
atgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaatgaaacaac |
3178861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 3231119 - 3231180
Alignment:
| Q |
114 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
175 |
Q |
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||||||||||| |||||||| || ||| ||| |||||| |||||||| ||||||||| |||| |
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| T |
3231119 |
atgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaatgaaacaac |
3231180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 3239918 - 3239979
Alignment:
| Q |
114 |
atgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatgaagcaac |
175 |
Q |
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||||||||||| ||||||||||| ||| || |||||| |||||||| ||||||||| |||| |
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| T |
3239918 |
atgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaatgaaacaac |
3239979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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