View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_39 (Length: 224)
Name: NF0707_1D_low_39
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 24742324 - 24742458
Alignment:
| Q |
23 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24742324 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagtcactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatggc |
24742423 |
T |
|
| Q |
123 |
cacgagaacatgcacatgaaacaatttacattcaa |
157 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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| T |
24742424 |
cacgagaatatgcacatgaaacaatttacattcaa |
24742458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 4203060 - 4203192
Alignment:
| Q |
25 |
cgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgacca |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |
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| T |
4203060 |
cgggacacttgaaacaaaaccaatcacttctataaatagagaagtcactcgaaagatgtatatcgacgaagttttaccagcaatcgaagaaaaatggcca |
4203159 |
T |
|
| Q |
125 |
cgagaacatgcacatgaaacaatttacattcaa |
157 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
4203160 |
cgagaatatgcacatgaaacaatttacattcaa |
4203192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 40287197 - 40287063
Alignment:
| Q |
23 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgac |
122 |
Q |
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| T |
40287197 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagtcactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatggc |
40287098 |
T |
|
| Q |
123 |
cacgagaacatgcacatgaaacaatttacattcaa |
157 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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| T |
40287097 |
cacgagaatatgcacatgaaacaatttacattcaa |
40287063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 7304356 - 7304486
Alignment:
| Q |
23 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgac |
122 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||||||| | |
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| T |
7304356 |
gccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttaccggccctcaaagaaaaatggc |
7304455 |
T |
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| Q |
123 |
cacgagaacatgcacatgaaacaatttacat |
153 |
Q |
| |
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| T |
7304456 |
cacaagaacatgcacatgaaacaatttacat |
7304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 16443829 - 16443699
Alignment:
| Q |
23 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||||||| | |
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| T |
16443829 |
gccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttaccggccctcaaagaaaaatggc |
16443730 |
T |
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| Q |
123 |
cacgagaacatgcacatgaaacaatttacat |
153 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
16443729 |
cacaagaacatgcacatgaaacaatttacat |
16443699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 10368612 - 10368480
Alignment:
| Q |
25 |
cgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgacca |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
10368612 |
cgggacacttgaaacgaaaccaatcacttctataaatagagaagtcactcaaaagatgtatatcgacgaagttttaccggcaatctaagaaaaatggcca |
10368513 |
T |
|
| Q |
125 |
cgagaacatgcacatgaaacaatttacattcaa |
157 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
10368512 |
cgagaacatgcacatgaaacaatttacattcaa |
10368480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 6124534 - 6124664
Alignment:
| Q |
23 |
gccgggacacttgaaacaaaaccaatcacttctataaatagagaagccactcgaaagatgtatatcgacgaagttttaccggcaatcaaagaaaaatgac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||||||| | |
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| T |
6124534 |
gccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttaccggccctcaaagaaaaatggc |
6124633 |
T |
|
| Q |
123 |
cacgagaacatgcacatgaaacaatttacat |
153 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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|
| T |
6124634 |
cacaagaacatgcacatgaaacaatttacat |
6124664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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