View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_42 (Length: 216)
Name: NF0707_1D_low_42
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 33790987 - 33791189
Alignment:
| Q |
9 |
agagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatat |
108 |
Q |
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| T |
33790987 |
agagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatat |
33791086 |
T |
|
| Q |
109 |
cattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtcca |
208 |
Q |
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| T |
33791087 |
cattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtaca |
33791186 |
T |
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| Q |
209 |
tct |
211 |
Q |
| |
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||| |
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| T |
33791187 |
tct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
71 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
170 |
Q |
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||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
171 |
agacgtgatggatta |
185 |
Q |
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|||||||| |||||| |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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