View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_47 (Length: 212)
Name: NF0707_1D_low_47
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 394651 - 394445
Alignment:
| Q |
1 |
agagaccaatttcagacacattcaacaatacataatgtgatccaaatttagaaattcccaaattnnnnnnngtcttcaaattcagaaagtttcaatccca |
100 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
394651 |
agagaccaatttcagacacagtcaaaaatacataatgtgatccaaatttagaaattcccaaattaaaaaaagtcttcaaattcagaaagtttcaatccca |
394552 |
T |
|
| Q |
101 |
caaaagttaaaaatagaaaccaacatcaagaaacttcattcgcaaggcatcatcaacatagtataaaaatttgatttttacaacttttctctagaaccca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394551 |
caaaagttaaaaatagaaaccaacatcaagaaacttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttctctagaaccca |
394452 |
T |
|
| Q |
201 |
tgattgt |
207 |
Q |
| |
|
||||||| |
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|
| T |
394451 |
tgattgt |
394445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 19765204 - 19764995
Alignment:
| Q |
1 |
agagaccaatttcagacacattcaacaatacataatgtgatc-----caaatttagaaattcccaaattnnnnnnngtcttcaaattcagaaagtttcaa |
95 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
19765204 |
agagaccaatttcagacacaatcaacaatacataatgtgattatgatccaatttagaaaatcccaaattaaaaaaagtcttcaaattcagaaagtttcaa |
19765105 |
T |
|
| Q |
96 |
tcccacaaaagttaaaaatagaaaccaacatcaagaaacttcattcgcaaggcatcatcaacatagtataaaaatttgatttttacaacttttctctaga |
195 |
Q |
| |
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| ||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19765104 |
ttccacaaaaga-aaaaatagaaacaaa-atcaagaaacttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttttctaga |
19765007 |
T |
|
| Q |
196 |
acccatgattgt |
207 |
Q |
| |
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||| |||||||| |
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|
| T |
19765006 |
acctatgattgt |
19764995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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