View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_1D_low_5 (Length: 449)
Name: NF0707_1D_low_5
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 24 - 430
Target Start/End: Original strand, 44283538 - 44283942
Alignment:
| Q |
24 |
gagacatgacctgaaaataagttttgaagtatgagacatgctcaccatacaagattcattgagccacctaccatcgagtcacttgacattaggccaacca |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283538 |
gagacatgacctgaaaataagttttgaagtatgagacatactcaccatacaagattcattgagccacctaccatcgagtcacttgacattaggccaacca |
44283637 |
T |
|
| Q |
124 |
aaattctaagatggtatcaaagcttgtcgnnnnnnnnnnnggaaaattagaactcaatgcattcctttgataagtaaacagtgaaaactcctaacatatt |
223 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283638 |
aaattctaagatggtatcaaagcttgtcgttttttttt--ggaaaattagaactcaatgcattcctttgataagtaaacagtgaaaactcctaacatatt |
44283735 |
T |
|
| Q |
224 |
tgaannnnnnngactcaaactacacaatttatggcagacgggtgacaattaacaccatttttcaactatgattcaggattttggttacctttatgatcca |
323 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283736 |
tgaatttttttgactcaaactacacaatttatggcagacgggtgacaattaacaccatttttcaactatgattcaggattttggttacctttatgatcca |
44283835 |
T |
|
| Q |
324 |
aacaatgagacagctggagcatttgtgccagcacaaatactctatgatgcattccatggaagatatcacaattccgctggagcaatagttctcctattta |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44283836 |
aacaatgagacagctggagcatttgtgccagcacaaatactctatgatgcattccatggaagatatcacaattccgctggagcaatagttctcctattta |
44283935 |
T |
|
| Q |
424 |
tcatttg |
430 |
Q |
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||||||| |
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|
| T |
44283936 |
tcatttg |
44283942 |
T |
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