View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0707_1D_low_9 (Length: 341)
Name: NF0707_1D_low_9
Description: NF0707_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_1D_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 2546162 - 2546252
Alignment:
| Q |
6 |
cagagatgaaacccaaaagtaaagttgagaaccaaattcccattcttatgtcaaaaagaatacaatatgcccagtgcttaaacatgcagtt |
96 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
2546162 |
cagaaatgaaacccaaaagtaaagttgagaaccaaattccctttcttatgtcaaaaagaatacaatatgccaagtgcttaaacatgtagtt |
2546252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 21012267 - 21012164
Alignment:
| Q |
90 |
tgcagtttacgacggtctaaatcctttcatccagtctgacccacacttgtccaccgagaatgaaat-gaccacatgccctaacttgtctaactgtttgat |
188 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||| | |||| || || |||| ||||||||||||||| |
|
|
| T |
21012267 |
tgcagttcacgacggtccaaattctttcatccggtctgacccacacttgtccaccgagaatggaatgggccacctg-ccaaactcgtctaactgtttgat |
21012169 |
T |
|
| Q |
189 |
tcaac |
193 |
Q |
| |
|
||||| |
|
|
| T |
21012168 |
tcaac |
21012164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 21012137 - 21012099
Alignment:
| Q |
219 |
gaatggttgggccgggttcgacccacatgtccacccttg |
257 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21012137 |
gaatggttgggtcgggttcgacccacatgtccacccttg |
21012099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 990 times since January 2019
Visitors: 4400