View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_high_21 (Length: 216)
Name: NF0707_2D_high_21
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_high_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 16790618 - 16790798
Alignment:
| Q |
36 |
gataaaatatctgatgaacaaggaatgtgtaggttgcgagaggctattttgaaaatttatttgtataaaatgatagcactcgtacaccagttatagatgc |
135 |
Q |
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| T |
16790618 |
gataaaatatctgatgaacaaggaatgtgtaggttgcgagaggctattttgaaaatttatttgtataaaataatagcactcgtacaccagttatagatgc |
16790717 |
T |
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| Q |
136 |
tatttcgactgtgatcacagaggatgataatgctcttttaacaaccccctttcaacctcaagaatatgttttctatgcacc |
216 |
Q |
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| T |
16790718 |
tatttcgactgtgatcacagaggatgataatgctcttttaacaaccccctttcaacctcaagaatatgttttctatgcacc |
16790798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 20155778 - 20155636
Alignment:
| Q |
36 |
gataaaatatctgatgaacaaggaatgtgt-aggttgcgagaggctattttgaaaatttatttgtataaaatgatagcactcgtacaccagttatagatg |
134 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| |||| ||||||||||||||| |
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| T |
20155778 |
gataaaatatctgatgaacatggaatgtgtcaggttgcgagaggctattttaaaaatttatttgtacaaaataatagcgttcgttcaccagttatagatg |
20155679 |
T |
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| Q |
135 |
ctatttcgactgtgatcacagaggatgataatgctcttttaac |
177 |
Q |
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||||||| || ||||||||| ||||||||||| ||||||||| |
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| T |
20155678 |
ctatttcaaccgtgatcacataggatgataataatcttttaac |
20155636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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