View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_2D_high_5 (Length: 450)

Name: NF0707_2D_high_5
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_2D_high_5
NF0707_2D_high_5
[»] chr1 (5 HSPs)
chr1 (30-432)||(22055644-22056046)
chr1 (30-162)||(29372957-29373087)
chr1 (51-126)||(22056741-22056815)
chr1 (34-129)||(29371712-29371810)
chr1 (1-39)||(22055601-22055639)
[»] chr4 (5 HSPs)
chr4 (120-405)||(17525746-17526031)
chr4 (146-405)||(6824128-6824394)
chr4 (105-405)||(28787545-28787856)
chr4 (273-405)||(24854082-24854213)
chr4 (31-128)||(28786832-28786928)
[»] scaffold0406 (1 HSPs)
scaffold0406 (120-405)||(5834-6123)
[»] chr8 (1 HSPs)
chr8 (30-283)||(1275377-1275635)
[»] chr7 (1 HSPs)
chr7 (30-128)||(22622554-22622652)
[»] chr5 (5 HSPs)
chr5 (188-262)||(5047683-5047757)
chr5 (188-262)||(5046912-5046986)
chr5 (220-290)||(5664125-5664195)
chr5 (34-126)||(5663931-5664022)
chr5 (5-39)||(5663885-5663919)
[»] chr3 (6 HSPs)
chr3 (332-407)||(12738935-12739010)
chr3 (41-126)||(2932826-2932912)
chr3 (31-122)||(1888660-1888751)
chr3 (34-128)||(1896721-1896814)
chr3 (34-128)||(1906167-1906260)
chr3 (185-267)||(12739032-12739112)
[»] chr2 (1 HSPs)
chr2 (336-400)||(6065615-6065679)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 432
Target Start/End: Original strand, 22055644 - 22056046
Alignment:
Q  30 ctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaacac 129  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055644 ctagaaacatttagcaaatttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaacac 22055743  T
Q  130 ccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacatgatatcatctcctcctgcattgatactcttcatagttgatcaat 229  Q
     |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  22055744 tcctccttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacatgatatcatctcctcatgcattgatacttttcatagttgatcaat 22055843  T
Q  230 tttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggttatgttgaagacttatgtca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055844 tttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggttatgttgaagacttatgtca 22055943  T
Q  330 tagaccattcttgccccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaaggatcactctcgatgctttagttggatggaat 429  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22055944 tagaccattcttgctccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaaggatcactcttgatgctttagttggatggaat 22056043  T
Q  430 ctc 432  Q
    |||    
T  22056044 ctc 22056046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 29373087 - 29372957
Alignment:
Q  30 ctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaacac 129  Q
    |||||||||| |||||||||||| ||||| ||   |||||||||||||||||||||||||||||||| |||||| |||| | ||||||||  |||||| |    
T  29373087 ctagaaacatgtagcaactttaaactattctataattctctaatagacattgtcatatttttaactaaattattctagaaacatgtatca--ttcaactc 29372990  T
Q  130 ccctatttaatgtatgtttcgaaaactccaaat 162  Q
     |||  |||||| || | |||||||||||||||    
T  29372989 tcctccttaatgcatatgtcgaaaactccaaat 29372957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 22056741 - 22056815
Alignment:
Q  51 aagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaa 126  Q
    |||||||||||||||||||||||||||| || |||| ||||||||| |||| ||| || |||||||||||||||||    
T  22056741 aagctattatagttttctctaatagacactggcata-ttttaactagattactttggaaatatgtatcaatttcaa 22056815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 29371810 - 29371712
Alignment:
Q  34 aaacatttagcaactttaagctattatagtt----ttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaacac 129  Q
    |||||| || |||| ||||||||||||| ||    |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||| ||||||||||    
T  29371810 aaacatgtaacaacattaagctattatacttagtattctctaatagaaattgtcatatttttaacta-aatattttagaaatatgtatcgatttcaacac 29371712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22055639 - 22055601
Alignment:
Q  1 ttcaattaatgtctagattaaattgtagcctagaaacat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22055639 ttcaattaatgtctagattaaattgtagcctagaaacat 22055601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 120 - 405
Target Start/End: Original strand, 17525746 - 17526031
Alignment:
Q  120 atttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatac 211  Q
    |||||||||| |||  || ||| || ||||||||||| ||||| |||||| |||| ||||||||||        | |||||||||||| |||||||||||    
T  17525746 atttcaacactcctccttgatgcatatttcgaaaacttcaaatgtagtacgtagttgctcaaacatagattttcgctatcatctcctcttgcattgatac 17525845  T
Q  212 tcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggtta 311  Q
    |||||||||||||||||||| ||| ||||||||      ||||||| ||||||||| ||| ||||||||||||| ||||  || ||||| |||| | |      
T  17525846 tcttcatagttgatcaatttgacaggtgttacc------atgataggaaatttgtgccacctcttgccataatatttgttattggtctccttgt-gatct 17525938  T
Q  312 tgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaaggatcact 405  Q
    |||||||||||| || ||| |||||||||||| |||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  17525939 tgttgaagacttctg-catggaccattcttgctccttaggtactctagtaatttttcttgttggtcttgttaaagacatctaacaaggatcact 17526031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 146 - 405
Target Start/End: Original strand, 6824128 - 6824394
Alignment:
Q  146 tttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatactcttcatagttgatcaattttacaag 237  Q
    ||||||||||| ||||| |||||| |||| ||||||||||        | ||||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  6824128 tttcgaaaacttcaaatgtagtacgtagttgctcaaacatagatttgtgttatcatctcctcctgcattgaaactcttcatagttgatcaatttgacagg 6824227  T
Q  238 tgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggttatgttgaagacttatgtcatagaccat 337  Q
    ||||| ||| ||||||||||  |||||||| ||| ||||||||||||| ||||  ||  |||| |||| |||  |||||||||||| || ||| ||||||    
T  6824228 tgttagctccaccatgatagagaatttgtgccacctcttgccataatatttgttattgatctccttgtcggtcttgttgaagacttctg-catggaccat 6824326  T
Q  338 tcttgccccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaaggatcact 405  Q
    | || | |||||| | ||| |||||||||||||||| || ||||||||||||||| ||||||| ||||    
T  6824327 tttttctccttaggtactccagtaattttccttgttagtcttgttaaagacatctgacaaggaccact 6824394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 405
Target Start/End: Complemental strand, 28787856 - 28787545
Alignment:
Q  105 tagagatatgtatcaatttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctc 196  Q
    |||| |||||||||||||||||||| |||  || ||| || |||| |||||||||| | |||||| |||| |||| |||||        |||||||||||    
T  28787856 tagaaatatgtatcaatttcaacactcctccttgatgcat-tttcaaaaactccaattgtagtacctagttgctcgaacatagatttgtgatatcatctc 28787758  T
Q  197 ctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttg 296  Q
    ||   |||||||||||||||||||||||||||||| ||| ||||||| || || || | |||||||||||||||| ||||||||||||| ||||  || |    
T  28787757 ct---gcattgatactcttcatagttgatcaatttgacaggtgttacatccactataacagtaaatttgtgtcacctcttgccataatatttgttattgg 28787661  T
Q  297 tctctttgttggtt-------atgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttgttggttttgttaaagaca 389  Q
    |||| |||| ||||        |||||||||||| || |||  ||||||||| | ||||||||  ||||||||| |||||||||||| || |||||| ||    
T  28787660 tctccttgtcggttgtcggtcttgttgaagacttttgacatgtaccattcttcctccttagttggtctagtaatgttccttgttggtatttttaaaggca 28787561  T
Q  390 tctaacaaggatcact 405  Q
    | ||||||||| ||||    
T  28787560 tttaacaaggaacact 28787545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 405
Target Start/End: Complemental strand, 24854213 - 24854082
Alignment:
Q  273 tcttgccataatacttgtcgtttgtctctttgttggttatgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttgt 372  Q
    ||||||| ||||| ||||  || |||||||||  |||  |||||||||||| |  ||| |||||||||||| ||||||   |||||||||||||||||||    
T  24854213 tcttgccgtaatatttgttattggtctctttgccggtcttgttgaagacttcta-catggaccattcttgctccttaggcactctagtaattttccttgt 24854115  T
Q  373 tggttttgttaaagacatctaacaaggatcact 405  Q
    | || ||||||||||||||||||||||| ||||    
T  24854114 tcgtcttgttaaagacatctaacaaggaccact 24854082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 28786928 - 28786832
Alignment:
Q  31 tagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaaca 128  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| | ||||||||   |||||||| | ||||||||| |||| ||||||||||||||    
T  28786928 tagaaacatgtagcaactttaagttattctagttttctctaata-aaattgtcattaatttaactagaatattttagaaatatatatcaatttcaaca 28786832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 120 - 405
Target Start/End: Complemental strand, 6123 - 5834
Alignment:
Q  120 atttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatac 211  Q
    |||||||||| |||  || ||| || ||||||||||| ||||| |||||| |||| ||||||||||        | ||||||| ||||||||||||| ||    
T  6123 atttcaacactcctccttgatgcatatttcgaaaacttcaaatgtagtacttagttgctcaaacatagatttgtgctatcatcccctcctgcattgaaac 6024  T
Q  212 tcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggtta 311  Q
    ||||| |||||||||||||| ||| |||||||||| |||||||||| ||||||||| ||  | ||||||||||| ||||  || ||||  |||| ||       
T  6023 tcttcgtagttgatcaatttgacaggtgttacctccaccatgatagaaaatttgtgacatctattgccataatatttgttattggtcttcttgtcgg--- 5927  T
Q  312 tgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaaggatcact 405  Q
    | |||||||||| || |||||||||||| ||| |||||| | |||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  5926 tcttgaagacttctg-catagaccattcatgctccttaggtactcttgtaattttccttgttggtcttgttaaagacatctaacaaggaccact 5834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 1275377 - 1275635
Alignment:
Q  30 ctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaacac 129  Q
    |||||||||| |||||||||| || |||| |||||||||||||||||| | || |||||   ||||| |  ||| |||| ||||||||||||||||||||    
T  1275377 ctagaaacatgtagcaactttgagttattctagttttctctaatagacgtcgttatatt---aactagaaaattctagaaatatgtatcaatttcaacac 1275473  T
Q  130 ccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatactcttcatagt 221  Q
     |||  || ||| || ||||  ||||||||||| || | | |||| ||||||||||        ||||||||||  |||| |||||||||||||||||||    
T  1275474 tcctccttgatgcatatttcagaaactccaaatgtaatgcgtagttgctcaaacatagatttgtgatatcatcttttcctacattgatactcttcatagt 1275573  T
Q  222 tgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataa 283  Q
    |||| ||||| |||||| ||||||| |||||||||||| |||||||| || |||||| ||||    
T  1275574 tgattaatttgacaagtcttacctccaccatgatagtacatttgtgttacctcttgctataa 1275635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 22622554 - 22622652
Alignment:
Q  30 ctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaaca 128  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||  ||||||||| | |||| |||| |||||||||||||||||||    
T  22622554 ctagaaacatgtggcaactttaagctattatagttttttctaatagacattatcattattttaactagaatattctagaaatatgtatcaatttcaaca 22622652  T

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Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 5047757 - 5047683
Alignment:
Q  188 tatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  5047757 tatcatctcctcctgcattgatactcttcatagttgatcaatttgacaggtgttacctccaccatgatagaaaat 5047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 5046986 - 5046912
Alignment:
Q  188 tatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaat 262  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||    
T  5046986 tatcatatccttctgcattgatactcttcatagttgatcaatttgacaggtgttacctccaccatgatagaaaat 5046912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 5664125 - 5664195
Alignment:
Q  220 gttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt 290  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| ||||||| ||||    
T  5664125 gttgatcaatttgacaagtgttacctccaccgtgatagtaaatttgtgtcacttcttgtcataatatttgt 5664195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 5663931 - 5664022
Alignment:
Q  34 aaacatttagcaactttaagctattatagttttctctaat-agacattgtcatatttttaactatattattttagagatatgtatcaatttcaa 126  Q
    |||||| |||||||||||||||| | ||| ||||||| || |||||||||||| |||||||||| | |||| || | |||||||||||||||||    
T  5663931 aaacatgtagcaactttaagctactctag-tttctctgatcagacattgtcat-tttttaactagaatattctaaaaatatgtatcaatttcaa 5664022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 5663919 - 5663885
Alignment:
Q  5 attaatgtctagattaaattgtagcctagaaacat 39  Q
    ||||||||||| |||||||||||||||||||||||    
T  5663919 attaatgtctaaattaaattgtagcctagaaacat 5663885  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 12739010 - 12738935
Alignment:
Q  332 gaccattcttgccccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaaggatcactct 407  Q
    |||||||||| | |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12739010 gaccattctttctccttagttgctctagtaattttccttgttggtcttgttaaggacatctaacaaggatcactct 12738935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 2932826 - 2932912
Alignment:
Q  41 tagcaactttaagctattatagttttctctaatagacattgtca-tatttttaactatattattttagagatatgtatcaatttcaa 126  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||| | |||| |||| |||||||||||||||||    
T  2932826 tagcaactttaagctattctagttttttctaatagacattgtcattttttttaactagaatattctagaaatatgtatcaatttcaa 2932912  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 1888751 - 1888660
Alignment:
Q  31 tagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatt 122  Q
    ||||||||| |||||||||| ||||||| | ||||| |||||||||||||||||| |||||||||| | |||| |||| ||||| |||||||    
T  1888751 tagaaacatgtagcaacttttagctattcttgttttttctaatagacattgtcatttttttaactagaatattctagaaatatgcatcaatt 1888660  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 1896814 - 1896721
Alignment:
Q  34 aaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaaca 128  Q
    |||||| | |||||||||||||||| ||||||| |||||||||||||||||| |||| ||||| | |||| |||| |||| |||| |||||||||    
T  1896814 aaacatgtggcaactttaagctattctagtttt-tctaatagacattgtcattttttaaactagaatattctagaaatatttatctatttcaaca 1896721  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 1906260 - 1906167
Alignment:
Q  34 aaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaaca 128  Q
    |||||| | |||||||||||||||| ||||||| |||||||||||||||||| |||| ||||| | |||| |||| |||| |||| |||||||||    
T  1906260 aaacatgtggcaactttaagctattctagtttt-tctaatagacattgtcattttttaaactagaatattctagaaatatttatctatttcaaca 1906167  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 12739112 - 12739032
Alignment:
Q  185 tgatatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtg 267  Q
    |||||||| |||||||||||||||||||||| |||| |||||||||| |||  |||||| || ||| |||||| |||||||||    
T  12739112 tgatatcagctcctcctgcattgatactctttatagatgatcaatttgaca--tgttacatccaccgtgatagaaaatttgtg 12739032  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 400
Target Start/End: Original strand, 6065615 - 6065679
Alignment:
Q  336 attcttgccccttagtttctctagtaattttccttgttggttttgttaaagacatctaacaagga 400  Q
    |||||| | ||||||||||| | ||| |||||||| ||||| |||||||||||||||||||||||    
T  6065615 attcttactccttagtttctatggtagttttccttattggtcttgttaaagacatctaacaagga 6065679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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