View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_11 (Length: 458)
Name: NF0707_2D_low_11
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 23 - 458
Target Start/End: Original strand, 4467577 - 4468012
Alignment:
| Q |
23 |
ttgctgtcatgaaagattgaaggtatagtcaaaatattgacacactaacattaagaggttagttttgtttatttttaagatctatatataattgttcatt |
122 |
Q |
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| T |
4467577 |
ttgctgtcatgaaagattgaaggtatagtcaaaatattgacacactaacattaagaggttagttttgtttatttttaagatctatatataattgttcatt |
4467676 |
T |
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| Q |
123 |
tttaaaacaaaagtgtaggtggagttttttgttttgttgaaatactatcactattatgtagaaagagaaagcaaaaatgtaaaataacctggatttgatc |
222 |
Q |
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| T |
4467677 |
tttaaaacaaaagtgtaggtggagttttttgttttgttgaaatactatcactattatgtagaaagagaaagcaaaaatgtaaaataacctggatttgatc |
4467776 |
T |
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| Q |
223 |
tccggcagtgattacaagtgcaccttgttcaggacagaaagtcaaccaacttttctttgagtaaacatgaaactctgaagagccatcacacacatgcaaa |
322 |
Q |
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| T |
4467777 |
tcccgcagtgattacaagtgcaccttgttcaggacagaaagtcaaccaacttttctttgagtaaacatgaaactctgaagagccatcacacacatgcaaa |
4467876 |
T |
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| Q |
323 |
cataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattcctattaatatcttgatgat |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467877 |
cataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattcctattaatatcttgatgat |
4467976 |
T |
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| Q |
423 |
gcttgtaaatgcaacaaagtgtcccaacttcatttc |
458 |
Q |
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| T |
4467977 |
gcttgtaaatgcaacaaagtgtcccaacttcatttc |
4468012 |
T |
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