View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_14 (Length: 447)
Name: NF0707_2D_low_14
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 363101 - 363535
Alignment:
| Q |
13 |
catcagcaatatttggagacatggaggaagatgatccggaataattccgtcggtaatgatggggatcatgatcatgagacttaggcattggattctcctg |
112 |
Q |
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| T |
363101 |
catcagcaatatttggagacatggaggaagatgatccggaataattccgacggtaacgatggggatcatgatcatgagacttaggcattgaattctcctg |
363200 |
T |
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| Q |
113 |
tacttttacctggtcgagacttagaaattttaacttgatttgttctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatct |
212 |
Q |
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| T |
363201 |
tacttttacctggtcgagacttagaaattttaacttgatttattctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatct |
363300 |
T |
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| Q |
213 |
aacaccttgtcgtatacgttcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaaccactgaccgaat |
312 |
Q |
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| T |
363301 |
aacaccttgtcgtatacattcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaacctctgaccgaat |
363400 |
T |
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| Q |
313 |
aactcttgtaacgaatgcgaccttttcctgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgccat |
412 |
Q |
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| T |
363401 |
gactcttgtaacgaatgcgaccttttcatgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgtcat |
363500 |
T |
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| Q |
413 |
tcctttgtcagtcacagggagaaggttactgacac |
447 |
Q |
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| T |
363501 |
tcctttgtcagtgacagggagaaggttactgacac |
363535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 60 - 295
Target Start/End: Complemental strand, 41024094 - 41023859
Alignment:
| Q |
60 |
cgtcggtaatgatggggatcatgatcatgagacttaggcattggattctcctgtacttttacctggtcgagacttagaaattttaacttgatttgttctg |
159 |
Q |
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||||||||| || ||||| ||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |
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| T |
41024094 |
cgtcggtaacgaaggggaacatgatcatgagactcagacattggattctcctctacttttacatggtcgagacttataaattttaacttgatttgttatg |
41023995 |
T |
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| Q |
160 |
gcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatctaacaccttgtcgtatacgttcttataagaaaactcgttgttttcaaa |
259 |
Q |
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| T |
41023994 |
gcgagccatacaacccaagtaagttgttcatcttatcagctaacattttttcacatactgagtcgtatacattcttatacgaaaaatcgttgttcttaaa |
41023895 |
T |
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| Q |
260 |
agacttgatgcagtaaatcaacgtttcagtgaaata |
295 |
Q |
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| T |
41023894 |
agacttgatgatgtaaatcaacgtttcagtgcaata |
41023859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 447
Target Start/End: Complemental strand, 41023794 - 41023701
Alignment:
| Q |
354 |
gtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgccattcctttgtcagtcacagggagaaggttactgacac |
447 |
Q |
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|||| ||| ||||||| |||||| | || || || |||| ||||||| ||||||| |||| ||||||||| | |||||||||||||||||||| |
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| T |
41023794 |
gtttagcaagcggacaagtaaacacatattctccactttttcgaagcttttggtgtcatttgtttgtcagtgatagggagaaggttactgacac |
41023701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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