View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_2D_low_16 (Length: 447)

Name: NF0707_2D_low_16
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_2D_low_16
NF0707_2D_low_16
[»] chr8 (16 HSPs)
chr8 (19-447)||(36183315-36183743)
chr8 (267-372)||(36214837-36214943)
chr8 (244-354)||(36184957-36185067)
chr8 (244-354)||(36208141-36208251)
chr8 (257-371)||(36197123-36197238)
chr8 (246-372)||(36213572-36213705)
chr8 (246-354)||(36188749-36188857)
chr8 (244-352)||(36202669-36202777)
chr8 (96-191)||(36196957-36197050)
chr8 (246-355)||(36210230-36210339)
chr8 (246-348)||(36201286-36201388)
chr8 (145-191)||(36202557-36202603)
chr8 (111-196)||(36201140-36201223)
chr8 (145-188)||(36199150-36199193)
chr8 (96-196)||(36207982-36208080)
chr8 (306-355)||(36199307-36199356)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 36183315 - 36183743
Alignment:
Q  19 ggcatatggtcatatcatgacagttaaacagatcatatctttgattacaagcacaagcaattgatggaaaaaacagtcctaaatcgagtgtcccatgaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183315 ggcatatggtcatatcatgacagttaaacagatcatatctttgattacaagcacaagcaattgatggaaaaaacagtcctaaatcgagtgtcccatgaag 36183414  T
Q  119 atcatagtgtacaactaggaggactgttgcagctccttcatcttagcacacaaaataagagctctttctgcagctgtcgtttaccaaaacacatacaagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183415 atcatagtgtacaactaggaggactgttgcagctccttcatcttagcacacaaaataagagctctttctgcagctgtcgtttaccaaaacacatacaagt 36183514  T
Q  219 gaacttagctatattagtcttaccgtcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183515 gaacttagctatattagtcttaccgtcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgct 36183614  T
Q  319 aagacgatcttttggaacaattgatctctctcagctcacttatagccgtttttataagatgctccattcttttatctggtccacgtaatccgattggtca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183615 aagacgatcttttggaacaattgatctctctcagctcacttatagccgtttttataagatgctccattcttttatctggtccacgtaatccgattggtca 36183714  T
Q  419 ctcactcttagtgcactcacaatctgttc 447  Q
    |||||||||||||||||||||||||||||    
T  36183715 ctcactcttagtgcactcacaatctgttc 36183743  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 372
Target Start/End: Original strand, 36214837 - 36214943
Alignment:
Q  267 accaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatctctctcagctc-acttatagcc 365  Q
    ||||||||||||| |||||| |||||||||  |||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||  ||||||||     
T  36214837 accaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctcttcttatagct 36214936  T
Q  366 gttttta 372  Q
    |||||||    
T  36214937 gttttta 36214943  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 36184957 - 36185067
Alignment:
Q  244 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 343  Q
    |||||||| |||||||||||||||||||| |||||| ||||||   |||||||  | ||||  ||||||||||||  ||| |||||||||||||||||||    
T  36184957 tcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 36185056  T
Q  344 ctctctcagct 354  Q
    |||||||||||    
T  36185057 ctctctcagct 36185067  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 36208141 - 36208251
Alignment:
Q  244 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 343  Q
    |||||||| |||||||||||||||||||| |||||| ||||||   |||||||  | ||||  ||||||||||||  ||| |||||||||||||||||||    
T  36208141 tcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 36208240  T
Q  344 ctctctcagct 354  Q
    |||||||||||    
T  36208241 ctctctcagct 36208251  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 371
Target Start/End: Original strand, 36197123 - 36197238
Alignment:
Q  257 ctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatctctctcagctc- 355  Q
    ||||||||  ||||||| ||||| |||||| |||||||||  |||||| |||||||||||||  ||| ||||||||||| |||||||||||||||||||     
T  36197123 ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaataattgatctctctcagctct 36197222  T
Q  356 acttatagccgttttt 371  Q
     |||||||| ||||||    
T  36197223 tcttatagctgttttt 36197238  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 36213572 - 36213705
Alignment:
Q  246 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttg------ctaagacgatcttttggaacaat 339  Q
    |||||||||||||||||||  ||||||||||||| |||||  |||||||||  |||||| |||||||||||      ||  ||| |||||||||||||||    
T  36213572 aaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaacaat 36213671  T
Q  340 tgatctctctcagctc-acttatagccgttttta 372  Q
    ||||||||||||||||  |||||||| |||||||    
T  36213672 tgatctctctcagctcttcttatagctgttttta 36213705  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 36188749 - 36188857
Alignment:
Q  246 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct 345  Q
    |||||||||||||||||||   ||||||| |||| |||||| |||||||||  |||||| ||| ||||||| |  ||| |||||||||||||||||||||    
T  36188749 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatct 36188848  T
Q  346 ctctcagct 354  Q
     ||||||||    
T  36188849 ttctcagct 36188857  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 36202669 - 36202777
Alignment:
Q  244 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 343  Q
    |||||||| |||| |||||||  ||||||||||||| |||||| |||||||||  ||||||  ||||| ||||||  ||| ||||||| |||||||||||    
T  36202669 tcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgat 36202768  T
Q  344 ctctctcag 352  Q
    |||||||||    
T  36202769 ctctctcag 36202777  T

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Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 36196957 - 36197050
Alignment:
Q  96 cctaaatcgagtgtcccatgaagatcatagtgtacaactaggaggactgtt-gcagctccttcatcttagcacacaaaataagagctctttctgcag 191  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||   ||||| ||||||| ||||||||||||||||||| | |||||||||||||||    
T  36196957 cctaaatcgagtctcccacgaagatcatacagtacaactagga---ctgtttgcagctctttcatcttagcacacaaaagatgagctctttctgcag 36197050  T

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Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 36210230 - 36210339
Alignment:
Q  246 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct 345  Q
    ||||||||||||||||||| | ||||||| |||| |||||| |||||||||  |||||| ||||||||||| |  ||| |||||||||||| | ||||||    
T  36210230 aaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatct 36210329  T
Q  346 ctctcagctc 355  Q
     |||| ||||    
T  36210330 ttctctgctc 36210339  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 36201286 - 36201388
Alignment:
Q  246 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct 345  Q
    |||||||||||||||||||  |||||| |||||| ||||||   |||||||  ||||||  ||||||||||||  |||  ||||||||||||||||||||    
T  36201286 aaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattgatct 36201385  T
Q  346 ctc 348  Q
    |||    
T  36201386 ctc 36201388  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 36202557 - 36202603
Alignment:
Q  145 ttgcagctccttcatcttagcacacaaaataagagctctttctgcag 191  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||    
T  36202557 ttgcagctccttcatcttagcacacagtagaagagctctttctgcag 36202603  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 36201140 - 36201223
Alignment:
Q  111 ccatgaagatcatagtgtacaactaggaggactgtt-gcagctccttcatcttagcacacaaaataagagctctttctgcagctgtc 196  Q
    ||||||||||||||  ||||||||||||   ||||| |||||||||||||||||||||| | || | ||||||| ||||||| ||||    
T  36201140 ccatgaagatcatacagtacaactagga---ctgtttgcagctccttcatcttagcacaaataagatgagctctatctgcagttgtc 36201223  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 36199150 - 36199193
Alignment:
Q  145 ttgcagctccttcatcttagcacacaaaataagagctctttctg 188  Q
    ||||||||| |||||||||||||||| || ||||||||||||||    
T  36199150 ttgcagctctttcatcttagcacacagaagaagagctctttctg 36199193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 36207982 - 36208080
Alignment:
Q  96 cctaaatcgagtgtcccatgaagatcatagtgtacaactaggaggactgtt-gcagctccttcatcttagcacacaaaataagagctctttctgcagctg 194  Q
    |||||||| ||| | ||||||||||||||  |||||||||| |   ||||| |||| | ||| ||||||||||||| || ||||||||||||||||| ||    
T  36207982 cctaaatcaagtctaccatgaagatcatacagtacaactagta---ctgtttgcagtttctttatcttagcacacagaagaagagctctttctgcagttg 36208078  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 36199307 - 36199356
Alignment:
Q  306 tgtcacagttgctaagacgatcttttggaacaattgatctctctcagctc 355  Q
    ||||||||||| |  ||| |||||||||||||||||||||||||| ||||    
T  36199307 tgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctc 36199356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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