View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_18 (Length: 354)
Name: NF0707_2D_low_18
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 11856225 - 11856472
Alignment:
| Q |
18 |
aattctgttgcaagttacacttgaaattgtatagc--ataggaaaaattaaaaacagtaacctaaagaagtgatagaaa--gagataagtactggatttg |
113 |
Q |
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| T |
11856225 |
aattgtgttgcaagttacacttgaaataacatagatgataggaaaaattaaaaacagtaacctaaagaagtgatagaaattgagataagtactggatttg |
11856324 |
T |
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| Q |
114 |
tgagtttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatcagtgcctgaatcaaagtccca |
213 |
Q |
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| T |
11856325 |
tgagtttggtaataactttgtctccaactttaaaatcgttgacttgcggtccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtccca |
11856424 |
T |
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| Q |
214 |
agatcaaagaaatccttattatatcctaaatgtatgcagggaatgagt |
261 |
Q |
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| T |
11856425 |
agagcaaaagaatctatgttatatcctaagagtaagcatggaatgagt |
11856472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 11841885 - 11842056
Alignment:
| Q |
66 |
aaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatccttaacttgctgtcc |
165 |
Q |
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| T |
11841885 |
aaaacagaaacctaaggaagtgaaagaaagagataagtacttgatgtgtgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtcc |
11841984 |
T |
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| Q |
166 |
aacctctacaacctctcctgctacatcagtgcctgaatcaaagtcccaagatcaaagaaatccttattatat |
237 |
Q |
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| T |
11841985 |
aacctctaccacctctccagctacatcagtgcctgaatcaaagtcccaagagcaaaggaatcttaattatat |
11842056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 11802018 - 11802145
Alignment:
| Q |
94 |
agagataagtactggatttgtgagtttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatca |
193 |
Q |
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| T |
11802018 |
agagataggtactagattgttgagtttagcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatca |
11802117 |
T |
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| Q |
194 |
gtgcctgaatcaaagtcccaagatcaaa |
221 |
Q |
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| T |
11802118 |
gtgcctgaatcaaattcccaagagcaaa |
11802145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 11431112 - 11431301
Alignment:
| Q |
18 |
aattctgttgcaagttacacttgaaattgtatagcataggaaaaattaaaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgag |
117 |
Q |
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|||| |||||||| ||||||||||||||| | | |||||||| || | | || ||||| |||||||| | ||||||||||| |||| |||| |||| |
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| T |
11431112 |
aattgtgttgcaatttacacttgaaattg-agaccataggaagaaatgagaa--gtaacacaaagaagtaaaagaaagagatacttacttgattgttgag |
11431208 |
T |
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| Q |
118 |
tttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatcagtgcctgaatcaaagtc |
210 |
Q |
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| T |
11431209 |
tttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagtc |
11431301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 11564354 - 11564165
Alignment:
| Q |
18 |
aattctgttgcaagttacacttgaaattgtatagcataggaaaaattaaaaacagtaacctaaagaagtgatagaaagagataagtactggatttgtgag |
117 |
Q |
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|||| |||||||| ||||||||||||||| | | |||||||| || | | || ||||| |||||||| | ||||||||||| |||| |||| |||| |
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| T |
11564354 |
aattgtgttgcaatttacacttgaaattg-agaccataggaagaaatgagaa--gtaacacaaagaagtaaaagaaagagatacttacttgattgttgag |
11564258 |
T |
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| Q |
118 |
tttggtaataactttgtctccaactttaaaatccttaacttgctgtccaacctctacaacctctcctgctacatcagtgcctgaatcaaagtc |
210 |
Q |
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| T |
11564257 |
tttagcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagtc |
11564165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 11856470 - 11856520
Alignment:
| Q |
295 |
agtataaatataatccttcggtttccagagaaaagagaccctgataagtat |
345 |
Q |
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| T |
11856470 |
agtataaatataatccttcggtttccagagaaaagaggccctgataagtat |
11856520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 11808062 - 11808106
Alignment:
| Q |
162 |
gtccaacctctacaacctctcctgctacatcagtgcctgaatcaa |
206 |
Q |
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| T |
11808062 |
gtccaacttctactacctctcctgctacatcagtgcctgaatcaa |
11808106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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