View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_2 (Length: 1022)
Name: NF0707_2D_low_2
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_2 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 885; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 22 - 1022
Target Start/End: Original strand, 43256054 - 43257051
Alignment:
| Q |
22 |
agggagtgctgtttccgcgggaattaaacctgctttgccgagaatttcaggtgctatagctcctgctgctcccaacattgcgaagcggccgttgattatc |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43256054 |
agggagtgctgtttccgcgggaattaaacctgctttgccgagaatttcaggtgctatagctcctgctgctcccaacattgcgaagcggccgttgattatc |
43256153 |
T |
|
| Q |
122 |
tcgccgtatgctaaccattctggctcaatgaatccaccgactccttcaggatctgaaagtcctagagggtcaaatccaaagtcaccaggaaggctgcaag |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43256154 |
tcgccgtatgctaaccattctggctcaatgaatccaccgactccttcaggatctgaaagtcctagagggtcaaatccaaagtcaccaggaaggctgcaag |
43256253 |
T |
|
| Q |
222 |
tgatgatgaggccaaataaagtcaatttcatacttgccacatatagtgttactcaacaaagttgcatgcatatctacatgttgtatagttgtaatatggg |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43256254 |
tgatgatgaggccaaataaagtcaatttcatacttgacacata--gtgttactcaacaaagttgcatgcatatctacatgttgtatagttgtaatatggg |
43256351 |
T |
|
| Q |
322 |
tgctttgttatccaagcatccgagcttatattaacacaatcaattgtctaaatatttggatgaaactataaaaataactttaaatgtgtccacaagctgt |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43256352 |
tgctttgttatccaagcatccgagcttatattaacacaatcacttgtctaaatatttggatgaaactataaaaataactttaaatgtgtccacaagctgt |
43256451 |
T |
|
| Q |
422 |
ctttagattatttcgataggttttgtataataattattaaaataaatagtttaatgatttcctctaaaactataaaattagattaagcaaaatcataaac |
521 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43256452 |
ctttagattatttcgataggttttgtataataattattaaaataaatagtttaatcatttcctctacaactataaaattagattaagcaaaatcataaac |
43256551 |
T |
|
| Q |
522 |
gataaatgatataataagtgcttaatcnnnnnnnnntctcaaaagccttctagggtcttagagtcacaaaacatctaccatacaaagttaccacaagtaa |
621 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43256552 |
gataaatgatataataagtgcttaatcaaaaaaaattctcaaaagccttctagggtcttagagtcacaaaacatctaccatacaaagttaccacaagtaa |
43256651 |
T |
|
| Q |
622 |
tatnnnnnnnntatattggtactcaaacaagtgttatccaacaaagttgcatatctaatctgagcttatgcctcaacacaagcacttgcataagtaattt |
721 |
Q |
| |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43256652 |
tat-aaaaaaatatattgttactcaaacaagtgttatccaacaaagttgcatatctaatctgagcttatgcctcaacacaagcacttgcataagtaattt |
43256750 |
T |
|
| Q |
722 |
attgagattgtaaaattaacttaaaaatatttcataattacattgtctttaacttatttcaatatgttttttagaataatttatgnnnnnnncttctaac |
821 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43256751 |
attgagattgtaaaattaacttaaaaatatttcataattacattgtctttaacttatttcaatatgttttttagaataatttatgaaaacaacttctaac |
43256850 |
T |
|
| Q |
822 |
atgtatgaacaacaagtaacttgtatagaaaagttcaatagtttcatctttaactatgaaagtagattattcgtaatcataaacgataataaacacttga |
921 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43256851 |
atgtatgaacaacaagtaacttgtatagaaaagttcaatagtttcatctttaactatgaaagtagattatccgtaatcataaacgataataaacacttga |
43256950 |
T |
|
| Q |
922 |
ttaaactgtttacttaggcatactcaagattcttaaatcttactcacaaaacatccaccttacaacagttttttgttcaactacgtaggaatttacctgc |
1021 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43256951 |
ttaaactgtttacttaggcatactcaagattcttaaatcttactcacaaaacatccaccttacaacagttttttgttcaactacttaggaatttacctgc |
43257050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 338
Target Start/End: Original strand, 43259320 - 43259634
Alignment:
| Q |
22 |
agggagtgctgtttccgcgggaattaaacctgctttgccgagaatttcaggtgctatagctcctgctgctcccaacattgcgaagcggccgttgattatc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
43259320 |
agggagtgctgtttccgcgggaattaaacctgctttgccaagaatttcaggtgctatagctccggctgctcccaacattgcaaatcggccgttgattatc |
43259419 |
T |
|
| Q |
122 |
tcgccgtatgctaaccattctggctcaatgaatccaccgactccttcaggatctgaaagtcctagagggtcaaatccaaagtcaccaggaaggctgcaag |
221 |
Q |
| |
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|| ||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43259420 |
tcaccgtatgctaaccatcttggttcaatgaatccaccggttccttcgggatctgaaagtcctagagggtcaaatccaaagtcacccggaaggctgcaag |
43259519 |
T |
|
| Q |
222 |
tgatgatgaggccaaataaagtcaatttcatacttgccacatatagtgttactcaacaaagttgcatgcatatctacatgttgtatagttgtaatatggg |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43259520 |
tgatgatgaggccaaataaagtcaatttcatacttg--acacatagtgttactcaacaaagttgcatgcatatctacatgttgtatagttgtgttatggg |
43259617 |
T |
|
| Q |
322 |
tgctttgttatccaagc |
338 |
Q |
| |
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||||||||||||||||| |
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| T |
43259618 |
tgctttgttatccaagc |
43259634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 353 - 624
Target Start/End: Original strand, 43259973 - 43260243
Alignment:
| Q |
353 |
taacacaatcaattgtctaaatatttggatgaaactataaaaataactttaaatgtgtccacaagctgtctttagattatttcgataggttttgtataat |
452 |
Q |
| |
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|||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| ||| |
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| T |
43259973 |
taacgcaatcacttgtctaagtatttggatgaaactataaagataactttaaatgtgttcacaagttgtctttagattatttccataggttttgtagaat |
43260072 |
T |
|
| Q |
453 |
aa-ttattaaaataaatagtttaatgatttcctctaaaactataaaattagattaagcaaaatcataaacgataaatgatataataagtgcttaatcnnn |
551 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| |||| ||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
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| T |
43260073 |
aatttattaaagtaaatagtttaatcatttcatctactactgtaaaattagattaagcataatcataaacgataaatg--ataattagtgcttaatcgaa |
43260170 |
T |
|
| Q |
552 |
nnnnnntctcaaaagccttctagggtcttagagtcacaaaacatctaccatacaaagttaccacaagtaatat |
624 |
Q |
| |
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|| |||||||||||| | ||||||| ||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
43260171 |
aagatttcgcaaaagccttctgagatcttagactcacaaaacatctaccagacatagttaccacaagtaatat |
43260243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 814 - 1022
Target Start/End: Original strand, 43260440 - 43260652
Alignment:
| Q |
814 |
cttctaacatgtatgaacaacaagtaa---cttgtatagaaaagttcaatagtttcatctttaactatgaaagtagattattcgtaatcataaacgataa |
910 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |
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| T |
43260440 |
cttcaaacatgtatgaacaacaagtaataacttgtataaaaaagttcaatagtttcatctttaattatgaaagtagattataaataatcataagcgataa |
43260539 |
T |
|
| Q |
911 |
taaacacttgat-taaactgtttacttaggcatactcaagattcttaaatcttactcacaaaacatccaccttacaacagttttttgttcaactacgtag |
1009 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| | |||||| ||||||||| || |
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| T |
43260540 |
taaacacttgatcaaaacgttttacttaggcatactctaggttcttaaatcttactcaaaaaacatccaccttacaatacttttttcttcaactacaaag |
43260639 |
T |
|
| Q |
1010 |
gaatttacctgcc |
1022 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43260640 |
gaatttacctgcc |
43260652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 673 - 776
Target Start/End: Original strand, 43260340 - 43260442
Alignment:
| Q |
673 |
tatctaatctgagcttatgcctcaacacaagcacttgcataagtaatttattgagattgtaaaattaacttaaaaatatttcataattacattgtcttta |
772 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||||| |
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| T |
43260340 |
tatctaatctgagcttatggctcaacacaagcacttgcataagtaatttgttgagattgcaaaattaagttaaaaatatttcataattaca-tgtcttta |
43260438 |
T |
|
| Q |
773 |
actt |
776 |
Q |
| |
|
|||| |
|
|
| T |
43260439 |
actt |
43260442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 678
Target Start/End: Original strand, 43260262 - 43260305
Alignment:
| Q |
636 |
attggtactcaaa-caagtgttatccaacaaagttgcatatcta |
678 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
43260262 |
attggtactcaaaacaagtgttatccaacaaacttgcatatcta |
43260305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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