View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0707_2D_low_20 (Length: 334)
Name: NF0707_2D_low_20
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 39495729 - 39495413
Alignment:
| Q |
1 |
agaagcagttgattggatggggacctgcagattgcaatagtgttccaaaatccagagatttcagtttatgataaataaatgtacctaattcaagcatgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39495729 |
agaagcagttgattggatggggacctgcagattgcaacagtgttccaaaatccagagatttcagtttatgataaataaatgtacctaattcaagcatgca |
39495630 |
T |
|
| Q |
101 |
tatgactgatatcatcagagagtagaaaatagattaatgcatattatatagcagggtgatggtacactactaatgttttatgaatttaacttcatggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39495629 |
tatgactgatatcatcagagagtagaaaatagattaatgcatattatatagcagggtgatggtacactactaatgttttatgaatttaacttcatggttt |
39495530 |
T |
|
| Q |
201 |
agtgcttatgatttgtgaatacaggcattgtgtagagtatatt--ggtaagctattatgcagtgttaatagtattagtaactgataattacataagttgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39495529 |
agtgcttatgatttgtgaatacaggcattgtgtagagtatattggggtaagctattatgcagtgtgaatagtattagtaactgataattacataagttgt |
39495430 |
T |
|
| Q |
299 |
tatgttagtcatcgtat |
315 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39495429 |
tatgttagtcatcgtat |
39495413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1397 times since January 2019
Visitors: 4413