View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0707_2D_low_21 (Length: 327)
Name: NF0707_2D_low_21
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 23818434 - 23818745
Alignment:
| Q |
1 |
caccttgttaattacatatgtatactagtaatatgtaatatgcagttgatgtaattttagttttatttatcatataccatttcagtttcagggttgagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23818434 |
caccttgttaattacatatgtatactagtaatatgtaatatgcagttgatgtaattttagttttatttatcatataccatttcagtttcagggttgagtt |
23818533 |
T |
|
| Q |
101 |
caaagagtgtgaatgatgatacagaaaatgttggtagcccatgttgcaaggtttctgatgaactcatttgctcaagtaatgcgggagtgatcttgcaatc |
200 |
Q |
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| T |
23818534 |
caaagagtgtaaatgatgatacagaaaatgttggtagcccatgttgcaaggtttctgatgaactcattagctcaagtaatgcgggagtgatcttgcaatc |
23818633 |
T |
|
| Q |
201 |
gtccaatttgaagagctttgctttgacagaacttcaggctgctacgagaaatttccgtgtagacagtgtgttaggagaaggtaattttggatcagttttt |
300 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
23818634 |
gtccaatttgaagaactttgctttgacagaaattcaggctgctacgagaaatttccgtgtagacagtgtgttaggagatggtgattttggatcagttttt |
23818733 |
T |
|
| Q |
301 |
aagggttggatt |
312 |
Q |
| |
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|||||||||||| |
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| T |
23818734 |
aagggttggatt |
23818745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 23823892 - 23824008
Alignment:
| Q |
189 |
gatcttgcaatcgtccaatttgaagagctttgctttgacagaacttcaggctgctacgagaaatttccgtgtagacagtgtgttaggagaaggtaatttt |
288 |
Q |
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|||||||||||| |||||||||||||| ||| |||||||||||||||||||||| || |||||||| |||||||||| |||||||||||| || ||||| |
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| T |
23823892 |
gatcttgcaatcatccaatttgaagagttttactttgacagaacttcaggctgcaactagaaattttcgtgtagacattgtgttaggagatggcgatttt |
23823991 |
T |
|
| Q |
289 |
ggatcagtttttaaggg |
305 |
Q |
| |
|
||||||||||||||||| |
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| T |
23823992 |
ggatcagtttttaaggg |
23824008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 23827821 - 23827940
Alignment:
| Q |
193 |
ttgcaatcgtccaatttgaagagctttgctttgacagaacttcaggctgctacgagaaatttccgtgtagacagtgtgttaggagaaggtaattttggat |
292 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||| ||| || |||||||| ||||| ||||||||||||||||| ||| ||||||||| |
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| T |
23827821 |
ttgcaatcatccaatttgaagagcttcactttgacagaacttcagaatgcaactagaaattttcgtgtggacagtgtgttaggagatggtgattttggat |
23827920 |
T |
|
| Q |
293 |
cagtttttaagggttggatt |
312 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
23827921 |
cagtttttaagggttggatt |
23827940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 23831603 - 23831767
Alignment:
| Q |
6 |
tgttaattacatatgtatactagtaatatgtaatatgcagttgatgtaattttagttttatttatcatataccatttcagtttcagggttgagttcaaag |
105 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||| || | |||||||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
23831603 |
tgttaattacatatgtatacta---atatgtaatatctagtttatat-----tagttttattgatcatat--catttcagtttcagggttaagttcaaag |
23831692 |
T |
|
| Q |
106 |
agtgtgaatgatgatacagaaaatgttggtagcccatgttgcaaggtttctgatgaactcatttgctcaagtaat |
180 |
Q |
| |
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|||||||||| | |||||| || || ||| |||||| |||||||||||| || |||| | ||||||||||| |
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| T |
23831693 |
agtgtgaatgtcaacacagaagatcttagtattccatgtagcaaggtttctggcgatctcagtagctcaagtaat |
23831767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 23831818 - 23831898
Alignment:
| Q |
189 |
gatcttgcaatcgtccaatttgaagagctttgctttgacagaacttcaggctgctacgagaaatttccgtgtagacagtgt |
269 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||| || |||||||||| ||| || ||||||||||||||||||||||| |
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| T |
23831818 |
gatcttacaatcaaccaatttgaagagctttacttctactgaacttcaggttgcaacaagaaatttccgtgtagacagtgt |
23831898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 23823694 - 23823842
Alignment:
| Q |
29 |
taatatgtaatatgcagttgatgtaattttagttttattt-atcatataccatttcagtttcagggttgagttcaaagagtgtgaatgatgatacagaaa |
127 |
Q |
| |
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|||||||||||||| |||| |||||| ||| |||||||| ||||||| |||| |||||||||||| |||||||||||||||| | |||||||| |
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| T |
23823694 |
taatatgtaatatgtagtttatgtaagttttgttttattggatcatatg--atttaagtttcagggttaagttcaaagagtgtgatagtcaatacagaag |
23823791 |
T |
|
| Q |
128 |
atgttggtagcccatgttgcaaggtttctgatgaactcatttgctcaagta |
178 |
Q |
| |
|
|| | || || ||||| ||||| ||||||||| |||||| ||||||||| |
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|
| T |
23823792 |
atcataatatcctatgttacaagggttctgatgatctcattagctcaagta |
23823842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 41458435 - 41458486
Alignment:
| Q |
261 |
agacagtgtgttaggagaaggtaattttggatcagtttttaagggttggatt |
312 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
41458435 |
agacaatgtgttaggagaaggtagttttggagcagtttttaagggttggatt |
41458486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 41441657 - 41441703
Alignment:
| Q |
265 |
agtgtgttaggagaaggtaattttggatcagtttttaagggttggat |
311 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41441657 |
agtgtgttaggagaaggtggttttggatcagtttttaagggttggat |
41441703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 41448067 - 41448112
Alignment:
| Q |
267 |
tgtgttaggagaaggtaattttggatcagtttttaagggttggatt |
312 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
41448067 |
tgtgttaggagaaggtgatttttgatcagtttttaagggttggatt |
41448112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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