View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_2D_low_22 (Length: 323)

Name: NF0707_2D_low_22
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_2D_low_22
NF0707_2D_low_22
[»] chr4 (2 HSPs)
chr4 (6-280)||(26076284-26076559)
chr4 (192-269)||(5721971-5722048)
[»] chr3 (3 HSPs)
chr3 (115-304)||(32368336-32368525)
chr3 (9-160)||(32368534-32368686)
chr3 (192-269)||(18645741-18645818)
[»] chr7 (3 HSPs)
chr7 (1-304)||(5243088-5243396)
chr7 (234-304)||(35898170-35898240)
chr7 (207-286)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (6-238)||(4958422-4958655)
chr1 (192-287)||(44536499-44536594)
[»] chr2 (2 HSPs)
chr2 (4-287)||(12370697-12370994)
chr2 (207-304)||(3461271-3461368)
[»] chr8 (2 HSPs)
chr8 (1-111)||(1182833-1182943)
chr8 (174-274)||(1183007-1183107)
[»] scaffold0038 (1 HSPs)
scaffold0038 (234-287)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (234-287)||(28248673-28248726)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 26076284 - 26076559
Alignment:
Q  6 cagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtg 105  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||    
T  26076284 cagaccagatatatgctttgcagtaagtataatcagtagattcatgaatgatccaaggaagtctcatctcactgcagctaaaagaatattgagatatgtg 26076383  T
Q  106 aaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaa 204  Q
    ||||| || ||||||||||||||| | ||||||||| | || ||   | |||| ||| |  ||||||||||||||||||||||||| |||| ||||| ||    
T  26076384 aaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattagagggatactctgattcagactggtgtgaagatataa 26076483  T
Q  205 tggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaacc 280  Q
    |||||||||  ||||||||||||||||||||||| || |||| || |||||||||||||||||  |||||||||||    
T  26076484 tggataggaagagcacttatggctacctattcaagttcaatggtgttgcaatctcatggtgcaaaaagaaacaacc 26076559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 5722048 - 5721971
Alignment:
Q  192 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 269  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  5722048 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 5721971  T

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Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 115 - 304
Target Start/End: Complemental strand, 32368525 - 32368336
Alignment:
Q  115 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 214  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  215 aagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 304  Q
    ||| |||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||||| || |||||||||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtga 32368336  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 32368686 - 32368534
Alignment:
Q  9 accagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaa 108  Q
    ||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||    
T  32368686 accagatatatcctttgcagtaagtatcatcggtaggttcatgaatgatccaaggaaatctcatctcactgtagctaaaagaatactgagatatgtgaaa 32368587  T
Q  109 gg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc 160  Q
    || ||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  32368586 ggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 18645818 - 18645741
Alignment:
Q  192 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 269  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  18645818 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 18645741  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 5243088 - 5243396
Alignment:
Q  1 aatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaa 100  Q
    ||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| || |||||| ||||||| |||| |||| |||||     
T  5243088 aatagtagaccagatatatgctttgcagtaagtatcattagaagattcatgaatgatccaaggaagtctcatctcactgcagccaaaataataatgagat 5243187  T
Q  101 atgtgaaaggacct-tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggaga 199  Q
    ||||||||||| || | ||||||||  || || || || ||  || |||  || || ||||||||||||| |||||||| ||||| ||||| |||||| |    
T  5243188 atgtgaaaggaactctaaagtttggtttgttgcttacaactgatagcaatgaaggaaaggctaagctagaaggatactcagattctgactggtgtggata 5243287  T
Q  200 tagaatggataggagaagcacttatgg----ctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatc 295  Q
     ||||||||||| |||||||||| |||     ||| ||||||| || ||||||||||||||||||||||| |||||||| |||||||||| | || ||||    
T  5243288 gagaatggatagaagaagcacttctggatatatacttattcaagttcaatgatgatgcaatctcatggtgtactaagaagcaaccagtcaatgctctatc 5243387  T
Q  296 atcatgtga 304  Q
    |||||||||    
T  5243388 atcatgtga 5243396  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 35898170 - 35898240
Alignment:
Q  234 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 304  Q
    |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  35898170 ttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 35898240  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 296559 - 296638
Alignment:
Q  207 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcac 286  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| ||||    
T  296559 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcac 296638  T

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Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 4958655 - 4958422
Alignment:
Q  6 cagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtg 105  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||| ||||| ||| ||||| |||||    
T  4958655 cagaccatatatatgctttgcagtaagtatcatcagtagattcatgaatgatccaaggaagtttcatctcactgcagcaaaaaggatattgagacatgtg 4958556  T
Q  106 aaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaa 204  Q
    ||||| ||  |||||||||||||| | || ||| || | |||||  || |||| ||| | |||||||||||||||||||||||||| |||||||||||||    
T  4958555 aaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactagagggatactctgattcagactggtgtggagatagaa 4958456  T
Q  205 tggataggagaagcacttatggctacctattcaa 238  Q
    ||||||| | |||||| | | |||||||||||||    
T  4958455 tggatagaaaaagcacctttagctacctattcaa 4958422  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 44536594 - 44536499
Alignment:
Q  192 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 287  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| |||||    
T  44536594 tgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcact 44536499  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 12370697 - 12370994
Alignment:
Q  4 agcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatg 103  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |||||| ||||| | ||||| ||| ||||| |||    
T  12370697 agcagaccagatatatgctttgcagtaagtatcatcagtagatgcatgaatgatccaaggaagtctcatctcactgcatcaaaaaggatattgagatatg 12370796  T
Q  104 tgaaagg----------------accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcaga 187  Q
    |||||||                ||  ||||||||||  || | || ||| || | |||||  || |||| ||| | |||||||||||||||||||||||    
T  12370797 tgaaaggcagatatgcgaaaggcacactgaagtttggtttgttattcccaactgcaaacaaagaaggagaagctgaactagagggatactctgattcaga 12370896  T
Q  188 ctgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 287  Q
    ||| |||||||||||||||||  ||| |||||| | | ||||||||||||| || |||| || |||||||||||||||||| ||||||||||||||||||    
T  12370897 ctggtgtggagatagaatgga--ggaaaagcacctctagctacctattcaagttcaatggtgctgcaatctcatggtgcacaaagaaacaaccagtcact 12370994  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 3461271 - 3461368
Alignment:
Q  207 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 304  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  3461271 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 3461368  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1182833 - 1182943
Alignment:
Q  1 aatagcagaccagatatatgctttgtagtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaa 100  Q
    |||| |||||| |||||||||||||  ||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||| | || |||     
T  1182833 aataacagacctgatatatgctttgcggtaagtatcatcagtagatacatgaatgatcctaggaaatctcatctcactgcagctaaaagagtgctaagat 1182932  T
Q  101 atgtgaaagga 111  Q
    |||||||||||    
T  1182933 atgtgaaagga 1182943  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 1183007 - 1183107
Alignment:
Q  174 tactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaaga 273  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| | ||||||  | ||||| || ||  ||| |||||| |||||||| || ||||    
T  1183007 tactctgattcagattggtgtgaagatagaagtgataggagaagcacatctggctatgtcttcaagttcaacaatgttgcaatatcatggtgtacaaaga 1183106  T
Q  274 a 274  Q
    |    
T  1183107 a 1183107  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 48835 - 48888
Alignment:
Q  234 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 287  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48835 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 48888  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 28248673 - 28248726
Alignment:
Q  234 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 287  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  28248673 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 28248726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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