View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_29 (Length: 272)
Name: NF0707_2D_low_29
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 34 - 272
Target Start/End: Complemental strand, 35275337 - 35275099
Alignment:
| Q |
34 |
ttaactatatgaaatccatcaagatttgaaagagtttaaataaagaaaaatctatcaatttagtacctaagttatcacatcatttcgatccggtccataa |
133 |
Q |
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| T |
35275337 |
ttaactataggaaatccatcaagatttgaaagagtttaaataaagaaaaatctatcaatttagtacctaagttatcacatcatttcgatccggtccataa |
35275238 |
T |
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| Q |
134 |
gttatataaacataataagttgtgtaaagtatatgaaatgcgttaatttaatccataaaatatataaattttctctatttagtccataacatctagaaga |
233 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35275237 |
gttatataaacataataagttgtgtaaagcatatgaaatgcgttaatttaatccataaaatatataaaatttctctatttagtccataacatctagaaga |
35275138 |
T |
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| Q |
234 |
gattaaatttaaagattttataaattcattacttattat |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35275137 |
gattaaatttaaagattttataaattcattacttattat |
35275099 |
T |
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