View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_3 (Length: 561)
Name: NF0707_2D_low_3
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 45693894 - 45693373
Alignment:
| Q |
18 |
gtttcaatcctcaatttgagtatgaaatatatgtcccattcacaaaacaaaaatagcagaagttcaattcaaatttctttaacataagctattaaaatgc |
117 |
Q |
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| T |
45693894 |
gtttcaatcctcaatttgagtatgaaatatatgtcccattcccacaacaaaaatagcagaagttcaattcaaatttctttaacataagctattaaaatgc |
45693795 |
T |
|
| Q |
118 |
ttgatatatatagatatcaaagagtcacatcatctaactaaaataattttcaccaagttttaannnnnnnngagagttggcaccatatggttattaactg |
217 |
Q |
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| T |
45693794 |
ttgatatatatagatatcaaagagtcacatcatctaactaaaatatttttcaccaagttttaattttttttgagagttggcaccatatggtta---actg |
45693698 |
T |
|
| Q |
218 |
ataatggaaagaactaaagatcttacactaatagtggattaaagttaactcctgtttctatactagatttctcatatatttttgtttttgctgacttgat |
317 |
Q |
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| T |
45693697 |
ataatggaaagaactaaagatcttacactaatagtggattaaagttaactcctgtttctatactagatttctcatatatttttgtttttgctgacttgat |
45693598 |
T |
|
| Q |
318 |
atttcttaggcggataaagcttcaatgctagatgaggcaattgagtatcttaaatcacttcaactccaactgcaagtattctttctcttcccttttacat |
417 |
Q |
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| T |
45693597 |
atttcttaggcggataaagcttcaatgctggatgaggcaattgagtatcttaaatcacttcaactccaactgcaagtattctttctcttcccttttacat |
45693498 |
T |
|
| Q |
418 |
tttcccttcaatcctttgaattttgatatttcacattatattatatccattctaacgcgatattttttctgatctttttacacagatcatgtcaatggga |
517 |
Q |
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| T |
45693497 |
tttcccttcaatcctttgaattttgatatttcacattatattatatccattctaatgcgatattttttctgatctttttacacagatcatgtcaatggga |
45693398 |
T |
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| Q |
518 |
ggtggtggtttatacatgcctatga |
542 |
Q |
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| T |
45693397 |
ggtggtggtttatacatgcctatga |
45693373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 37935686 - 37935757
Alignment:
| Q |
324 |
taggcggataaagcttcaatgctagatgaggcaattgagtatcttaaatcacttcaactccaactgcaagta |
395 |
Q |
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| T |
37935686 |
taggtggataaagcttctatgctggatgaggcaattgagtatctaaaaacacttcagctccaagttcaagta |
37935757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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