View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_32 (Length: 261)
Name: NF0707_2D_low_32
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 35520960 - 35520729
Alignment:
| Q |
13 |
atactctactaatttctttttgttttcacaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaacttg |
112 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520960 |
atactctactaatttcttcttgttttcgcaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaacttg |
35520861 |
T |
|
| Q |
113 |
aaagacaaagcattgaaccagaatattgttcccattttatccacaacataaagttgtcccttgtaaagtattatatcatcaaaacaatgggtttctccat |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35520860 |
aaagacaaagcatggaaccagaatattgttcccattttatccacaacataaagttggcccttgtaaagtatcatatcatcaaaacaatgggtttctccac |
35520761 |
T |
|
| Q |
213 |
catcgtcctctaacatggtatatgtattttct |
244 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35520760 |
catcgtcctctaacatggtatatgtattttct |
35520729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 38813405 - 38813588
Alignment:
| Q |
13 |
atactctactaatttctttttgttttcacaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaacttg |
112 |
Q |
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| T |
38813405 |
atactctactaattgcttcttgtttatgttagaattcacccttatatgcctattttcagcacaatggtacatgttttttggtgaaaattgaaccaacttc |
38813504 |
T |
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| Q |
113 |
aaagacaaagcattgaaccagaatattgttcccattttatccacaacataaagttgtcccttgtaaagtattatatcatcaaaa |
196 |
Q |
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| T |
38813505 |
aaggaaagagcattgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattatatcatcaaaa |
38813588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 38810754 - 38810903
Alignment:
| Q |
47 |
ttcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaacttgaaagacaaagcattgaaccagaatattgttccca |
146 |
Q |
| |
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|||||||||||||||| |||| ||||||||| |||||||||| |||||||| ||||||||||| || ||||||||||| | | |||| ||||||| |
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| T |
38810754 |
ttcacccttatatgcctctttttgtcacaacaggacaagttttttggtgaaaattgaaccaacttcaaggacaaagcatttatctagaaaattgttcatt |
38810853 |
T |
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| Q |
147 |
ttttatccacaacataaagttgtcccttgtaaagtattatatcatcaaaa |
196 |
Q |
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| T |
38810854 |
tatcatccataacataaagttgtccattataaagtattatatcataaaaa |
38810903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 38825373 - 38825481
Alignment:
| Q |
83 |
aagtttttaggtgaaaactgaaccaacttgaaagacaaagcattg---aaccagaatattgttcccattttatccacaacataaagttgtcccttgtaaa |
179 |
Q |
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|||||||| |||||||||||||||||||| || || |||||||| | |||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
38825373 |
aagttttttggtgaaaactgaaccaactttaaggataaagcattatttatccagaaaattgttcccattttatccacaaca--------tcccttgtaaa |
38825464 |
T |
|
| Q |
180 |
gtattatatcatcaaaa |
196 |
Q |
| |
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||||||||||||||||| |
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| T |
38825465 |
gtattatatcatcaaaa |
38825481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 35548754 - 35548873
Alignment:
| Q |
71 |
tcacaacagtacaagtttttaggtgaaaactgaaccaacttgaaagacaaagcattgaaccagaatattgttcccattttatccacaacataaagttgtc |
170 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |||| ||||| ||||| |||||| ||||| || ||| ||||||||||||||||||| |
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| T |
35548754 |
tcacaacagtacaacttt---ggtgaaaactgaaccaacttcaaagtcaaaggattgatccagaaaattgtcccgttttcatccacaacataaagttgtt |
35548850 |
T |
|
| Q |
171 |
ccttgtaaagtattatatcatca |
193 |
Q |
| |
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|| ||| ||| |||||||||||| |
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| T |
35548851 |
ccctgtgaagaattatatcatca |
35548873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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