View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_34 (Length: 259)
Name: NF0707_2D_low_34
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3649659 - 3649907
Alignment:
| Q |
1 |
catggtctcaaattgtagtcaacatcata----gttgtgcccacaatat--tgttgttgtggtagcctccacaaaaatattgtactacaatagttgtgtg |
94 |
Q |
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| T |
3649659 |
catggtctcaaattgtagtcaacatcatatatagttgtggccacaatatattgttgttgtggtagcctccacaaaaatattgtaccacaatagttgtgtg |
3649758 |
T |
|
| Q |
95 |
attttcaatcacgtctacgatcgcatcgcaatcatacaagaaaccacatcagttcctacgatgtccattcaaatattctcaccaaaaattaaaactttag |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3649759 |
attttcaatcacgtctacgatcgcatcgcaatcatacaagaaaccgcatcagttcctacgatgtccattcaaatattctcaccaaaaattaaaactttag |
3649858 |
T |
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| Q |
195 |
aaccacaaatacgaatcttctttagatataatgaccaatcttaccttca |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3649859 |
aaccacaaatacgaatcttctttagatataatgaacaatcttaccttca |
3649907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 38750928 - 38750844
Alignment:
| Q |
38 |
cacaatattgttgttgtggtagcctccacaaaaatattgtactacaatagttgtgtgattttcaatcacgtctacgatcgcatcg |
122 |
Q |
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|||||||||||||||||| ||| |||||||| | |||| || ||||||| |||||| ||||||||||| || | |||||||| |
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| T |
38750928 |
cacaatattgttgttgtgttagactccacaatgacattgcaccacaatagcattgtgatcttcaatcacgtgtatggtcgcatcg |
38750844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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