View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_2D_low_36 (Length: 258)

Name: NF0707_2D_low_36
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_2D_low_36
NF0707_2D_low_36
[»] chr7 (3 HSPs)
chr7 (16-253)||(32795439-32795676)
chr7 (121-253)||(17353935-17354067)
chr7 (156-216)||(22367620-22367680)
[»] chr4 (5 HSPs)
chr4 (156-258)||(13250179-13250281)
chr4 (149-250)||(18823251-18823352)
chr4 (149-253)||(29290781-29290883)
chr4 (156-253)||(33034002-33034099)
chr4 (149-249)||(33660231-33660330)
[»] chr3 (2 HSPs)
chr3 (152-253)||(13798179-13798280)
chr3 (149-215)||(51241801-51241867)
[»] chr6 (2 HSPs)
chr6 (103-250)||(28538792-28538938)
chr6 (149-248)||(28841258-28841357)
[»] chr5 (2 HSPs)
chr5 (149-248)||(24012421-24012520)
chr5 (149-248)||(41699631-41699730)
[»] chr1 (2 HSPs)
chr1 (149-236)||(12142164-12142251)
chr1 (149-248)||(2626676-2626775)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-71)||(197619-197667)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 32795439 - 32795676
Alignment:
Q  16 tttggtttttaccagttatgagttgagcgctttaacttttcaaccatggatgcttagttgtcgagggaatcctattttgtgctgttaaatactccatccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  32795439 tttggtttttaccagttatgagttgagcgctttaacttttcaaccatggatgcttagttgtcgagggaatcctattttgtgctgttaaatactccctcag 32795538  T
Q  116 taccattttaagtgtcacatttgctnnnnnnnnttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctct 215  Q
    |  |  |||||||||||||||||||        |||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||| |||||||||    
T  32795539 tttctatttaagtgtcacatttgctaaaaaaaattgttcctatttaagtatcacttatggagtttaagattgtaatatatcaattataccgttaacctct 32795638  T
Q  216 cgattaccaaatctgacacattaattgcatagtattat 253  Q
    |||||| |||||||||||||||||||||||||||||||    
T  32795639 cgattatcaaatctgacacattaattgcatagtattat 32795676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 17354067 - 17353935
Alignment:
Q  121 ttttaagtgtcacatttgctnnnnnnnnttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgatt 220  Q
    ||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||| |||    
T  17354067 ttttaagtgtcacatttgctaaaaaaaattgttcctatttaagtgtcacatttagagtttaagatggtaatatgtcaattatacccttaacctctcaatt 17353968  T
Q  221 accaaatctgacacattaattgcatagtattat 253  Q
    || ||||||||||||||||||||||||||||||    
T  17353967 actaaatctgacacattaattgcatagtattat 17353935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 22367680 - 22367620
Alignment:
Q  156 tatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctc 216  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  22367680 tatttaagtgtcgcttttaaagtttaaggttgtaatatatcaattataccctcaacctctc 22367620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 13250281 - 13250179
Alignment:
Q  156 tatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagtattatat 255  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |    
T  13250281 tatttaagtgtcacttttagagtttaagactgtaatatatcaattatacccttaacctctcaattactaaatctgacacattaattgcatagtattattt 13250182  T
Q  256 agc 258  Q
    |||    
T  13250181 agc 13250179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 18823251 - 18823352
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||||| ||||| |||| ||| ||||||||||||||||    
T  18823251 ttgttcctatttaagtgtcacttttagaatttaagattgtaatatgtcaattatacctttaacctctcaattactaaatttgatacattaattgcatagt 18823350  T
Q  249 at 250  Q
    ||    
T  18823351 at 18823352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 29290781 - 29290883
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    |||||||| |||||||| || |||||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||||||  ||||||||||||    
T  29290781 ttgttcctgtttaagtgccatttttagagtttaaaattgtaatatatcaattatacccttaacctctcaatgaccaaatctgacac--taattgcatagt 29290878  T
Q  249 attat 253  Q
    |||||    
T  29290879 attat 29290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 33034099 - 33034002
Alignment:
Q  156 tatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagtattat 253  Q
    ||||||||||| ||||||||| |||||| ||||||||| |||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  33034099 tatttaagtgttacttttagaatttaagattgtaatatgtcaattatactcttagcctctcaattactaaatctgacacattaattgcatagtattat 33034002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 33660231 - 33660330
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    ||||||||||||||||||||| |||||| |||||| | ||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  33660231 ttgttcctatttaagtgtcacatttagactttaagatggtaatatgtcaattataccctt-acctctcaattactaaatctgacacattaattgcatagt 33660329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 13798179 - 13798280
Alignment:
Q  152 ttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagtatt 251  Q
    ||||||||||||||||| |||||||||||||| || |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  13798179 ttcctatttaagtgtcatttttagagtttaagattataatatgtcaattatagccttaacctctcaattaccaaatctgacacattaattgcatagtatt 13798278  T
Q  252 at 253  Q
    ||    
T  13798279 at 13798280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 51241801 - 51241867
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctct 215  Q
    |||||| ||| ||||||||| |||||||||||||  ||||||||| || |||||| |||||||||||    
T  51241801 ttgttcttatataagtgtcatttttagagtttaaagttgtaatatgtctattatatccttaacctct 51241867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 28538938 - 28538792
Alignment:
Q  103 aatactccatccgtaccattttaagtgtcacatttgctnnnnnnnnttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattat 202  Q
    |||||||||||||| || | ||||||||||||||||||        ||||||||  |||||| |||||||||||||||||| ||||||||| ||||||||    
T  28538938 aatactccatccgttccttcttaagtgtcacatttgctaaaaaaa-ttgttcctgcttaagtatcacttttagagtttaagattgtaatatgtcaattat 28538840  T
Q  203 acccttaacctctcgattaccaaatctgacacattaattgcatagtat 250  Q
    |||||||||||||| ||||| ||||| |||||||  |||||| |||||    
T  28538839 acccttaacctctcaattactaaatcagacacatatattgcacagtat 28538792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 28841357 - 28841258
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    |||||||||| |||||||||||||||||||||||  ||||||||| || ||||||||||||||||||  ||  ||| || | | ||||||||||||||||    
T  28841357 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaacctctaaatagccacattttatacattaattgcatagt 28841258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 24012520 - 24012421
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    |||||||||| |||||||||||||||||||||||  ||||||||| || ||||||||||||||||||  ||| ||| || | | ||||||||||||||||    
T  24012520 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaacctctaaattgccacattttatacattaattgcatagt 24012421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 41699631 - 41699730
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    |||||||||| |||||||||||||||||||||||  ||||||||| || ||||||||||||| ||||  ||| ||| || | | ||||||||| ||||||    
T  41699631 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaatctctaaattgccacattttatacattaattacatagt 41699730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 12142251 - 12142164
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacat 236  Q
    |||||||||||||| |||||| |||||| |||||| | ||||||| ||||||||||||||||| |||| ||||| |||||||||||||    
T  12142251 ttgttcctatttaaatgtcacatttagactttaagatggtaatatgtcaattatacccttaacgtctcaattactaaatctgacacat 12142164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 2626775 - 2626676
Alignment:
Q  149 ttgttcctatttaagtgtcacttttagagtttaagtttgtaatatatcaattatacccttaacctctcgattaccaaatctgacacattaattgcatagt 248  Q
    |||||||||| |||||||||||||||||||||||  ||||||||| || ||||||||||||||||||  ||  ||| || | | ||||||||||||||||    
T  2626775 ttgttcctatataagtgtcacttttagagtttaaagttgtaatatgtctattatacccttaacctctaaatcgccacattttatacattaattgcatagt 2626676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 197667 - 197619
Alignment:
Q  23 tttaccagttatgagttgagcgctttaacttttcaaccatggatgctta 71  Q
    ||||||| |||||||||| ||||||||||  |||| |||||||||||||    
T  197667 tttaccaattatgagttgggcgctttaaccattcagccatggatgctta 197619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1413 times since January 2019
Visitors: 4416