View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_39 (Length: 255)
Name: NF0707_2D_low_39
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 30288808 - 30288565
Alignment:
| Q |
4 |
ggtagattatactgcagatgtattatgttttgattttaagttgtgttctatgatgtttccttgaaacttaacaaatataaacatgttcacatgtatgctg |
103 |
Q |
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| T |
30288808 |
ggtagatttttctgcagatgtattatgttttgattttaagttgtgttctatgatgtttccttgaaacttaacaaatataaacatgttcacatgtatgctg |
30288709 |
T |
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| Q |
104 |
ggatgattcatattaatttattgtttccaacagttcccctaaaaaacagaacagttattgcattgattatgatgtaatttgatctatgtagccaactata |
203 |
Q |
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| T |
30288708 |
ggatgattcatattaatttattgtttccaacagttcccctataaaacagaacagttattgcattgattatggtgtaatttgatctatgtagccaaccata |
30288609 |
T |
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| Q |
204 |
cttagtgggatactatttggttgttgtcgtaacagttgtattgc |
247 |
Q |
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| T |
30288608 |
cttagtgggatactatttggttgttgttgtaacagttgtattgc |
30288565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 41704832 - 41705047
Alignment:
| Q |
6 |
tagattatactgcagatgtattatgttttgattttaagttgtgttctatgatgtttccttgaaacttaacaaatataaacatgttcacatgtatgctggg |
105 |
Q |
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|||||| | ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
41704832 |
tagatttttctgcacatgtattatgttttgattttaac----gttctatgatgttttcttgaaacttaa---atataaacatgttcatatgtatgctggg |
41704924 |
T |
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| Q |
106 |
atgattcatattaatttattgtttccaacagttcccctaaaaaacagaacagttattgcattgattatgatgtaatttgatctatgtagccaactatact |
205 |
Q |
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| T |
41704925 |
atgtttcatattaatttattgtttctaaca---------------------gttattgtattgattatgacgtaatttgatctatttagccaaccatact |
41705003 |
T |
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| Q |
206 |
tagtgggatactatt---tggttgttgtcgtaacagttgtattg |
246 |
Q |
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| T |
41705004 |
tggtgggataatatttggtggttgttgttgtaacagttgtattg |
41705047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 28236400 - 28236461
Alignment:
| Q |
169 |
attatgatgtaatttgatctatgtagccaactatacttagtgggatactatttggttgttgt |
230 |
Q |
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| T |
28236400 |
attatggtgtaatttgatctatgtagccgaccccacttagtgggataagacttggttgttgt |
28236461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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