View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_41 (Length: 238)
Name: NF0707_2D_low_41
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 468044 - 467835
Alignment:
| Q |
17 |
ccaaccatttttatgtaatattttgaactaggatctgaatcattgtaataatttgttgttcgttccaataaataagagaaaatcaaattcattatgttaa |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
468044 |
ccaaccatttagatgtaatattttgaactaggatctgaatcattgtaataatttgttgtttgttccaataaataagagaaaatcaaattcattatgttaa |
467945 |
T |
|
| Q |
117 |
tatgcattcatattaactatttagtctgtttcgtcataaaaaatgaatttgaaaaacgatatataatggttattagttaatgtttacttgcatgtcattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
467944 |
tatgcattcatattaactatttagtctgtttcgtcataaaaaatgaatttgaaaaacgatatataatggttattagttaatgtttacttgcatgtcattc |
467845 |
T |
|
| Q |
217 |
tgtaatgatg |
226 |
Q |
| |
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|||||||||| |
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|
| T |
467844 |
tgtaatgatg |
467835 |
T |
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