View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_43 (Length: 234)
Name: NF0707_2D_low_43
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_43 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 2495629 - 2495826
Alignment:
| Q |
20 |
ttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctgaga |
119 |
Q |
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| T |
2495629 |
ttgtgcaaatgatattattgaattcttaaatgcatgcaacagtgcacaattccatagcattggtgaaatttcctgaatatgattgatatagtgtctgaga |
2495728 |
T |
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| Q |
120 |
ttgtaacaaagttcatttccatatgcgcgt--ttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataaca |
215 |
Q |
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| T |
2495729 |
ttgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttattttaattgcacctgaagcctcaaaatagacttataaca |
2495826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 2446957 - 2447068
Alignment:
| Q |
104 |
gatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaat |
203 |
Q |
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| T |
2446957 |
gattgagtgtctgagattgtaacaaagttcatttccatatgcatgtttgccttataatgtcacgatatttttactttagttgcacctgaagcctcaaaat |
2447056 |
T |
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| Q |
204 |
agacttataaca |
215 |
Q |
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|||||||||||| |
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| T |
2447057 |
agacttataaca |
2447068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 2634063 - 2634250
Alignment:
| Q |
26 |
aaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctgagattgt |
123 |
Q |
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| T |
2634063 |
aaatgatattattgaattcttacatgcacgtcacacattgtacaattc-ataacattggtgaaatgacctgaatataattgatataatttctgagattgt |
2634161 |
T |
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| Q |
124 |
aacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataaca |
215 |
Q |
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| T |
2634162 |
attgaagttcatttccatatgtg---ttgccttataatgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataaca |
2634250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 2504120 - 2504215
Alignment:
| Q |
113 |
tctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagactt |
209 |
Q |
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| T |
2504120 |
tctgagattgtagcgaagttcctttcaatatgtgtgtt-gccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactt |
2504215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 7332007 - 7331897
Alignment:
| Q |
93 |
tgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctga |
192 |
Q |
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||||||| |||||| ||||||||||||||||| |||||| |||||||||| | | ||| ||||| ||||||| ||||| | | |||| |||||||| | |
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| T |
7332007 |
tgaatatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtg-ttgtcttatgatgtctcaatattataattttaattgcacctta |
7331909 |
T |
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| Q |
193 |
agcctcaaaata |
204 |
Q |
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| T |
7331908 |
agcctcgaaata |
7331897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 675312 - 675119
Alignment:
| Q |
20 |
ttgtgcaaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga |
117 |
Q |
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||||| ||||||||||||||||||||| ||| |||| | | | |||||||| ||| ||||||||||||| || |||| |||||| ||||| |||| |
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| T |
675312 |
ttgtgaaaatgatattattgaattcttacacacacgtaacacattgtacaattc-ataacattggtgaaatgacgtggatatgattgatatagtgcctga |
675214 |
T |
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| Q |
118 |
gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataac |
214 |
Q |
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||||||| || || |||||| ||| | |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| |
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| T |
675213 |
gattgtagtgaattttgtttccacatgtg---ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataac |
675119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 749780 - 749715
Alignment:
| Q |
150 |
ttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataac |
214 |
Q |
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| T |
749780 |
ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataac |
749715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2485317 - 2485386
Alignment:
| Q |
20 |
ttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcattggtgaaatg |
89 |
Q |
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| T |
2485317 |
ttgtgtaaatgatattattgaattcctagacgcacacatcagtgtacaattccatagcaatggtgaaatg |
2485386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 2297 - 2489
Alignment:
| Q |
20 |
ttgtgcaaatgatattattgaattctttcacgcacgcgata--gtatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga |
117 |
Q |
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||||| ||||||||||||||||||||| ||| || || | | || |||||||| ||| ||||||| ||||| |||||||| ||||||||| ||||| | |
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| T |
2297 |
ttgtgtaaatgatattattgaattcttacacacatgcaacacagtgtacaattc-ataacattggtaaaatgacctgaatataattgatttattgtctta |
2395 |
T |
|
| Q |
118 |
gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataac |
214 |
Q |
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|||| || |||||||||||||||| | |||||||| |||||||| ||||||| | || |||||||| || |||||||||||||||||||| |
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| T |
2396 |
gattatagtgaagttcatttccatatatg---ttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataac |
2489 |
T |
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