View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_7 (Length: 508)
Name: NF0707_2D_low_7
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 21 - 508
Target Start/End: Complemental strand, 4872434 - 4871947
Alignment:
| Q |
21 |
accgactagatgatgataagtttacagctcaaccgaaaaccaccctttaggaagatgtaattgtgtaagagcattgctttgtaaatgtggcctggggcta |
120 |
Q |
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| T |
4872434 |
accgactagatgatgataagtttacagctcaaccgaaaaccaccctttaggaagatgtaattgtgtaagagcattgctttgtaaatgtggcctggggcta |
4872335 |
T |
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| Q |
121 |
aaagacaacagaaaagatcatacatattggaagaactgggacgaagaccagcgttgatgattttgcggaaaagagagaaagctgaagagatgtgaccgtt |
220 |
Q |
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| T |
4872334 |
aaagacaacagaaaagatcatacatatcggaagaactgggacgatgaccagcgttgatgattttgcggaaaagagagaaagctgaagagatgtgaccgtt |
4872235 |
T |
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| Q |
221 |
tttagcgtgacaagagatgaagattaaccaagtattaatgtccggtgtaacaggatgaaggttagggttttgcgattcaaattgtttagcaagtctaaga |
320 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4872234 |
tttagcgtgacaagagatgaggattaaccaagtattaatgtccggtgtaacaggatgaaggttagggtcttgcgattcaaattgtttagcaagtctaaga |
4872135 |
T |
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| Q |
321 |
acagtgctgtgttgatggatattaagaagggaagaaaaaagagcgatataatcggatatggtagagtaaccgcgagagagcatgtcatcgaaatcacgag |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4872134 |
acagtgctgtgttgatggatattaagaagggaagaaaaaagagcgttataatcggatatggtagagtaaccgcgagagagcatgtcatcgaaatcacgag |
4872035 |
T |
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| Q |
421 |
tagcagaattgatataagctattgtttccttcacccatttatagtaacaaggaggacgaggaagaggaggcatgtctatgaatggatc |
508 |
Q |
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| T |
4872034 |
tagcagaattgatataagctattgtttccttcacccatttatagtaacaaggaggacgaggaagaggaggcatgtctatgaatggatc |
4871947 |
T |
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