View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_2D_low_8 (Length: 490)
Name: NF0707_2D_low_8
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 229 - 475
Target Start/End: Original strand, 48429251 - 48429497
Alignment:
| Q |
229 |
attacgcttggttgaaaagatttaagcactccacatgacactatgctagtttagtgaagaaccacctcaatgccacaacttcaacccagccaaaaacaat |
328 |
Q |
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| T |
48429251 |
attacgcttggttgaaaagatttaagcactccacatgacactatgctagtttagtgaagaaccacctcaatgccacaacttcaacccagccaaaaacaat |
48429350 |
T |
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| Q |
329 |
gtgtaaagagaaagataaatgtgtcttgctgattgttcttcacaatgaagtcacctaactaaaaaatagtcattacaaaaaacttttaacatctcaatta |
428 |
Q |
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| T |
48429351 |
gtgtaaagagaaagataaatgtgtcttgctgattgttcttcacaatgaagtcacctaactaaaaaatagtcattacaaaaaacttttaacaactcaatta |
48429450 |
T |
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| Q |
429 |
aagtatgtacagattttatttcggtacatattttatcagttcttcat |
475 |
Q |
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| T |
48429451 |
aagtatgtacatattttatttcggtacatattttatcagttcttcat |
48429497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 48421984 - 48422193
Alignment:
| Q |
1 |
atacctattgcattgaacaaggcaacatctttggagtctgcatcctcgacaacttccactgcgcaatttaaactgtcaaatccttgtcaatttaagatgt |
100 |
Q |
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| T |
48421984 |
atacctattgcattgaacaaggcagcatctttggagtctgcatcctcgacaacttccactgcgcaatttaaactgtcaaatccttgtcaatttaagatgt |
48422083 |
T |
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| Q |
101 |
ggtgtgaatttgatttaggagcaacttcaccaactccgtatttctataaaaatcacac--aaaaaatgtgttatgttcgaaaatggacgtctgaatagaa |
198 |
Q |
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| T |
48422084 |
ggtgtgaatttgatttaggagcaacttcaccaactccgtatttctataaaaatcacacataaataatgtgttatgttcgaaaatggacgtctgaatagaa |
48422183 |
T |
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| Q |
199 |
caaagaaaaa |
208 |
Q |
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|||| ||||| |
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| T |
48422184 |
caaaaaaaaa |
48422193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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