View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0707_2D_low_9 (Length: 483)
Name: NF0707_2D_low_9
Description: NF0707_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_2D_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 44377889 - 44377444
Alignment:
| Q |
18 |
gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377889 |
gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta |
44377790 |
T |
|
| Q |
118 |
tcactgaggtacgagaaagaaggaaagccgtgtgaattatctgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377789 |
tcactgaggtacgagaaagaaggaaagccgtgtgaattatccgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactg |
44377690 |
T |
|
| Q |
218 |
caaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccct |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377689 |
caaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccct |
44377590 |
T |
|
| Q |
318 |
ttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattttgctcagaaggttgac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44377589 |
ttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcattgaaccgcgggctcctgagtggtattttgctcagaaggttgac |
44377490 |
T |
|
| Q |
418 |
tatctaaaagacaaagtggacgcggctttcatcaaggagcgtcgtg |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44377489 |
tatctaaaagacaaagtggacgcggctttcatcaaggagcgtcgtg |
44377444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 38721455 - 38721345
Alignment:
| Q |
18 |
gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta |
117 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||| | ||||||||| |||||||| ||| | |
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| T |
38721455 |
gacatcagtcatatgtgaaatatggtttgctgtatcttggataatggatcagtttccaaaatggtacccaataacgcgagaaacgtaccttgaccgtctt |
38721356 |
T |
|
| Q |
118 |
tcactgaggta |
128 |
Q |
| |
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||||||||||| |
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|
| T |
38721355 |
tcactgaggta |
38721345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 365
Target Start/End: Complemental strand, 38721198 - 38721005
Alignment:
| Q |
172 |
tttgttagtactgtggatcctatgaaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgt |
271 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| || || || |||||||| ||||| || ||||| || || || ||||| || || ||||| || | |
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|
| T |
38721198 |
tttgtcagtactgttgatcctatgaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatccagttgataaagttgcat |
38721099 |
T |
|
| Q |
272 |
gctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa |
365 |
Q |
| |
|
||||||| || || || ||||| ||||||||||| |||||||| ||||| || || || || ||||| || || |||||||| || |||||||| |
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| T |
38721098 |
gctatgtttcggatgatggtgctgctatgctaacttttgaagcactttctgagacatctgaatttgctaggaagtgggttccgttttgcaagaa |
38721005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 271 - 416
Target Start/End: Complemental strand, 13826346 - 13826201
Alignment:
| Q |
271 |
tgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttca |
370 |
Q |
| |
|
|||||||| || || ||||| || |||||| | ||||||||||| ||| | ||||| |||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
13826346 |
tgctatgtttctgatgacggcgccgctatgttgacatttgaagctcttgctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagtata |
13826247 |
T |
|
| Q |
371 |
gcatcgaaccacgggctcctgagtggtattttgctcagaaggttga |
416 |
Q |
| |
|
|| ||||| || || || |||||||| ||||| |||||| |||| |
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|
| T |
13826246 |
atattgaaccccgcgcacccgagtggtactttgcacagaagattga |
13826201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 402
Target Start/End: Complemental strand, 1177585 - 1177400
Alignment:
| Q |
217 |
gcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccc |
316 |
Q |
| |
|
|||||||||||||| || || |||||| ||||||| || | ||||| ||| | || ||||| || || || || ||||| ||| |||||||||| || |
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| T |
1177585 |
gcaaacacagttctatcaattctagcaatagattaccctgctgaaaaggtgtcatgttatgtttctgatgatggagcagcaatgttaacatttgaggcat |
1177486 |
T |
|
| Q |
317 |
tttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtatttt |
402 |
Q |
| |
|
| || |||||||| || |||||||| ||||||||||| || || |||||||||| ||| ||||| | ||||| || ||||||||| |
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|
| T |
1177485 |
tatctgaaacttctgaatttgcaaggaaatgggttcctttttgtaagaagttcaacattgaacctagagctccagaatggtatttt |
1177400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 49592571 - 49592507
Alignment:
| Q |
22 |
tcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctcc |
86 |
Q |
| |
|
||||| || ||||| ||||||||||| | || |||||||||||||||||||||||||||||||| |
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|
| T |
49592571 |
tcagttatctgtgagatttggtttgcattttcctggattttggatcagtttccaaaatggtctcc |
49592507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 9477841 - 9477932
Alignment:
| Q |
274 |
tatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa |
365 |
Q |
| |
|
|||||||| || || ||||| |||||| | ||||||||||| ||| | || || ||||| |||||||| ||||||||||| ||||||||||| |
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|
| T |
9477841 |
tatgtctctgatgatggtgctgctatgttgacatttgaagctcttgccgagacatcagaatttgcaaggaaatgggttcctttctgcaagaa |
9477932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 15170638 - 15170699
Alignment:
| Q |
21 |
atcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggt |
82 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
15170638 |
atcagtaatatgtgaaatatggtttgcattatcatggatacttgatcagtttccaaaatggt |
15170699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 434
Target Start/End: Complemental strand, 5128915 - 5128695
Alignment:
| Q |
214 |
actgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaag |
313 |
Q |
| |
|
||||| ||||||||||| || ||||| || || || ||||| ||||||||||| | || ||||| ||||| || ||||| || ||||| ||||||||| |
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|
| T |
5128915 |
actgccaacacagttctttctatccttgccgtggactatcctgtggaaaaagtatcatgttatgtttcagatgatggtgctgcaatgctgacatttgaat |
5128816 |
T |
|
| Q |
314 |
ccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattttgctcagaaggt |
413 |
Q |
| |
|
||||| || || | || ||||||||||| ||||| ||||| ||||| ||||| || |||||||| || ||||||| || || |||||||| | |
|
|
| T |
5128815 |
cccttgtggagacagctgactttgcaagaaagtgggtaccattttgcaaaaagtttgagattgaaccacgcgcacctgagttttacttctctcagaagat |
5128716 |
T |
|
| Q |
414 |
tgactatctaaaagacaaagt |
434 |
Q |
| |
|
||||||| | || |||||||| |
|
|
| T |
5128715 |
tgactatttgaaggacaaagt |
5128695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 54384068 - 54383968
Alignment:
| Q |
28 |
atatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactgaggt |
127 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| | |||||||| || ||||||| ||| |||| |||||||||||||||| ||| | ||||| |||| |
|
|
| T |
54384068 |
atatgtgaaatctggtttgctatatcatggatccttgatcagttccccaaatggtatcctattgatagagaaacataccttgaccgtctttcactcaggt |
54383969 |
T |
|
| Q |
128 |
a |
128 |
Q |
| |
|
| |
|
|
| T |
54383968 |
a |
54383968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 43436291 - 43436252
Alignment:
| Q |
328 |
tcagagtttgcaagaaaatgggttccattctgcaagaagt |
367 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43436291 |
tcagagtttgcgagaaaatgggttcctttctgcaagaagt |
43436252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 44632939 - 44633009
Alignment:
| Q |
196 |
aaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagt |
266 |
Q |
| |
|
|||||||| |||||| ||||||||||||| || | || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
44632939 |
aaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagt |
44633009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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