View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_high_17 (Length: 319)
Name: NF0707_high_17
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 45483340 - 45483080
Alignment:
| Q |
1 |
tataatgaaatgtaaaaagcaaaataatagatttggatttccgtaaacctgcaaattcacacattaatgcagtcaccactgcattagtagtcgttgagtt |
100 |
Q |
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| T |
45483340 |
tataatgaaatgtaaaaagcaaaataatagatttggatttccgtaaacctgcaaattcacacattaatgcagtcaccactgcgttagtagtcgttgagtt |
45483241 |
T |
|
| Q |
101 |
gagatcaggtggtttagattttaatacagattttgattttaagaaaatagaaatgtcgaaattgaaatatgaattgtccgatctcgatccaacactacta |
200 |
Q |
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| T |
45483240 |
gagatcaggtggtttagattttaatacagattttgattttaagaaaatagaaatgtcgaaattgaaatatgaattgtccgatctcgatccaacactacta |
45483141 |
T |
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| Q |
201 |
acatgttgactgcgtgatcacatccaaatccaagaagagtagcgtgtaatgtatcagatat |
261 |
Q |
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| T |
45483140 |
acatgctgactgcgtgatcacattcaaatccaagaagagtagcgtataatgtatcagatat |
45483080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 45483059 - 45483007
Alignment:
| Q |
262 |
taacacaattgctattccagct----gttagataggtttgacaaaagtataat |
310 |
Q |
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| T |
45483059 |
taacacagttgctattccagctagctgttagataggtttgacaaaagtataat |
45483007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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