View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_high_29 (Length: 240)
Name: NF0707_high_29
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1556882 - 1556988
Alignment:
| Q |
1 |
gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga |
100 |
Q |
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|||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||||||| |
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| T |
1556882 |
gcatatgttccttttccaaggagataatgatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctagga |
1556981 |
T |
|
| Q |
101 |
tcctatg |
107 |
Q |
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||||||| |
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| T |
1556982 |
tcctatg |
1556988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41286669 - 41286775
Alignment:
| Q |
1 |
gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga |
100 |
Q |
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|||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| |||||||||||||| || |||||| | |||||| ||||||||| |
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| T |
41286669 |
gcatttgttccttttccaagcagataatgatatatatcatcatgcaaagtatgaatgtatctaagcacgtcataattcttccactggttgccacctagga |
41286768 |
T |
|
| Q |
101 |
tcctatg |
107 |
Q |
| |
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| T |
41286769 |
tcctatg |
41286775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 9966057 - 9965974
Alignment:
| Q |
24 |
ataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatg |
107 |
Q |
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| T |
9966057 |
ataatgatctatatcctcatgcaaagtatgaatgtatctaagcacatcatacttcttccattggttgtcacctaggatcctatg |
9965974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 48478469 - 48478363
Alignment:
| Q |
1 |
gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga |
100 |
Q |
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|||| ||||||||| || || | ||||||||||||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||||||| |
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| T |
48478469 |
gcatatgttcctttccccaggagataatgatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctagga |
48478370 |
T |
|
| Q |
101 |
tcctatg |
107 |
Q |
| |
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||||||| |
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| T |
48478369 |
tcctatg |
48478363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36343585 - 36343690
Alignment:
| Q |
1 |
gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||| |||| |||||||| || | |||||| || ||||||||| |||| ||||||||||||| |
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| T |
36343585 |
gcatttgttcctttgccaagcagataatgatttatatcctcacgcaacgtatgaatgtaccaaagcacatcatacttcttc-attgattgtcacctagga |
36343683 |
T |
|
| Q |
101 |
tcctatg |
107 |
Q |
| |
|
||||||| |
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|
| T |
36343684 |
tcctatg |
36343690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 33979081 - 33978991
Alignment:
| Q |
17 |
caagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatg |
107 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||| ||||||||||| || || |||||| |||| |||||| |||||||||||| |
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| T |
33979081 |
caagcagataatgatctatatcctcatgaaaagtatgaatgtatctaagcacatcatatttcttccattgaatgtcacttaggatcctatg |
33978991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 11347840 - 11347944
Alignment:
| Q |
3 |
atttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatc |
102 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||| || |||||| |||||||| |||||||| | | ||||||||| ||||||||||||||||||| |
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| T |
11347840 |
atttgttcctttgtcaagcagatgatgatctatattctaatgcaatgtatgaatgtatctaagtatattatacttcttccattggttgtcacctaggatt |
11347939 |
T |
|
| Q |
103 |
ctatg |
107 |
Q |
| |
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||||| |
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|
| T |
11347940 |
ctatg |
11347944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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