View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_high_3 (Length: 638)
Name: NF0707_high_3
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 10 - 610
Target Start/End: Complemental strand, 37213392 - 37212767
Alignment:
| Q |
10 |
gcataggagtatgaaatttgttaaaccttgaagtgttatgtgttatttctgtgaatttggtgatgattttgccttatagaaaagt--------------- |
94 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213392 |
gcataggagtatgaaatttgttaaaccttgaagtgttatgtgttatttctgtgaatttggtgatgattttgccttatagaaaagtataaattatttaaaa |
37213293 |
T |
|
| Q |
95 |
--tgacatttttattaaaaatattacttcaagtggaagtcatttttcatttcctgatggaccatagaattttaattgaccaatattaataactaaaaaag |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213292 |
gttgacatttttattaaaaatattacttcaagtggaagtcatttttcatttcctgatggaccatagaattttaattgaccaatattaataactaaaaaag |
37213193 |
T |
|
| Q |
193 |
taatannnnnnngttcaccacacatgaaaagtgatcttctcatttttactcccagtaggaagtaagtgttaaaggaaattttctataatatttagtttag |
292 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213192 |
taacatctttttgttcaccacacatgaaaagtgatcttctcatttttactcacagtaggaagtaagtgttaaaggaaattttctataatatttagtttag |
37213093 |
T |
|
| Q |
293 |
ccttgaatagaacatttttggttgtttataacaatggaaaacctcttcatcaatgtatatgcttaggacttaatgtacaatgacatgtttcctcggtttc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213092 |
ccttgaatagaacatttttggttgtttataacaatggaaaacctcttcatcaatgtatatgcttaggacttaatgtacaatgacatgtttcctcggtttc |
37212993 |
T |
|
| Q |
393 |
tctaaaaaatattatctgtcttgttattttaaatttaacactaacttcaacttgttgccttgtggatatgttcagtcagagtctagggattgccccgtct |
492 |
Q |
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| T |
37212992 |
tctaaaaaatattatctgtcttgttattttaaatttaacactaacttcaacttgttgccttgtggatatgttcagtcagagtctagggattgccctgtct |
37212893 |
T |
|
| Q |
493 |
ctactagaaggcgattaaatttggattccacaatgatttctgatctccgtcgcactttgagatcttctgg--------gctctttgagatcctctaaaat |
584 |
Q |
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| T |
37212892 |
ctactagaaggcgattaaatttggattccacaatgatttctgatctccgttgcactttgagatcttctggtcgccgatgctctttgagatcctctaaaat |
37212793 |
T |
|
| Q |
585 |
gcctgttgaaaccggaacaacatctt |
610 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37212792 |
gcctgttgaaaccggaacaacatctt |
37212767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 437 - 610
Target Start/End: Complemental strand, 37218299 - 37218116
Alignment:
| Q |
437 |
cttcaacttgttgccttgtgg--atatgttcagtcagagtctagggattgccccgtctctactagaaggcgattaaatttggattccacaatgatttctg |
534 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| ||||| ||||||||||| ||| || |||||| | ||||||| | |||||||||||||||| |
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| T |
37218299 |
cttcaatttgttgccttgtgtgtatatgttcagttagagtatagggattgccgtgtcactcctagaaagaaattaaatccaaagtccacaatgatttctg |
37218200 |
T |
|
| Q |
535 |
atctccgtcgcactttgagatcttctgg--------gctctttgagatcctctaaaatgcctgttgaaaccggaacaacatctt |
610 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37218199 |
atctccgtcgcactttgagatcttctggtcgccgatgctctttgagatcctctaaaatgcctgttgaaaccggaacaacatctt |
37218116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 37203829 - 37203774
Alignment:
| Q |
303 |
aacatttttggttgtttataacaatggaaaacctcttcatcaatgtatatgcttag |
358 |
Q |
| |
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|||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
37203829 |
aacacttttggttgtttataacaaagcaaaacctctttatcaatgtatatgcttag |
37203774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 37196127 - 37196070
Alignment:
| Q |
298 |
aatagaacatttttggttgtttataacaatggaaaacctcttcatcaatgtatatgct |
355 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| | |||||||||||||||||| ||||||| |
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|
| T |
37196127 |
aataaaacacttttggttgtttatagcaaagcaaaacctcttcatcaatgcatatgct |
37196070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 37203664 - 37203611
Alignment:
| Q |
441 |
aacttgttgccttgtggatatgttcagtcagagtctagggattgccccgtctct |
494 |
Q |
| |
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||||| |||||||||| |||||||||||| |||||| |||||||||| |||||| |
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| T |
37203664 |
aacttcttgccttgtgtatatgttcagtctgagtcttgggattgccctgtctct |
37203611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 476
Target Start/End: Complemental strand, 37184695 - 37184657
Alignment:
| Q |
438 |
ttcaacttgttgccttgtggatatgttcagtcagagtct |
476 |
Q |
| |
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||||||||||||||||||| ||||||||||||| ||||| |
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| T |
37184695 |
ttcaacttgttgccttgtgcatatgttcagtcacagtct |
37184657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 7528755 - 7528662
Alignment:
| Q |
365 |
atgtacaatgacatgtttcctcggtttctctaaaaaatattatctgtc---ttgttattttaaatttaacactaacttcaacttgttgccttgtg |
456 |
Q |
| |
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||||||||||||||||||||| |||||||||||| | | | |||||| ||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
7528755 |
atgtacaatgacatgtttcctgagtttctctaaaataaaat-tctgtcttgttgttgttttagatttaatcctaacttcaacttgttgccttgtg |
7528662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 413109 - 413145
Alignment:
| Q |
365 |
atgtacaatgacatgtttcctcggtttctctaaaaaa |
401 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||| |
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| T |
413109 |
atgtacaatgacatgtttcttaggtttctctaaaaaa |
413145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 610
Target Start/End: Complemental strand, 7528571 - 7528527
Alignment:
| Q |
566 |
ctttgagatcctctaaaatgcctgttgaaaccggaacaacatctt |
610 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||| ||||||||||||| |
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| T |
7528571 |
ctttgagatcgtctaaaacgcctgttaaaactggaacaacatctt |
7528527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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