View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_high_30 (Length: 240)

Name: NF0707_high_30
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_high_30
NF0707_high_30
[»] chr4 (2 HSPs)
chr4 (1-109)||(1556882-1556990)
chr4 (1-109)||(41286669-41286777)
[»] chr7 (1 HSPs)
chr7 (24-109)||(9965972-9966057)
[»] chr1 (1 HSPs)
chr1 (1-109)||(48478361-48478469)
[»] chr5 (1 HSPs)
chr5 (1-109)||(36343585-36343692)
[»] chr2 (1 HSPs)
chr2 (17-111)||(33978987-33979081)
[»] chr6 (1 HSPs)
chr6 (3-108)||(11347840-11347945)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1556882 - 1556990
Alignment:
Q  1 gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga 100  Q
    |||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||| || |||||||| || ||||||||| ||||||||||||||||||    
T  1556882 gcatatgttccttttccaaggagataatgatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctagga 1556981  T
Q  101 tcctatgat 109  Q
    |||||||||    
T  1556982 tcctatgat 1556990  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41286669 - 41286777
Alignment:
Q  1 gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga 100  Q
    |||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| |||||||||||||| || |||||| | |||||| |||||||||    
T  41286669 gcatttgttccttttccaagcagataatgatatatatcatcatgcaaagtatgaatgtatctaagcacgtcataattcttccactggttgccacctagga 41286768  T
Q  101 tcctatgat 109  Q
    |||||||||    
T  41286769 tcctatgat 41286777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 9966057 - 9965972
Alignment:
Q  24 ataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgat 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  9966057 ataatgatctatatcctcatgcaaagtatgaatgtatctaagcacatcatacttcttccattggttgtcacctaggatcctatgat 9965972  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 48478469 - 48478361
Alignment:
Q  1 gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga 100  Q
    |||| ||||||||| || || | ||||||||||||||||||||||||||||||||| || |||||||| || ||||||||| ||||||||||||||||||    
T  48478469 gcatatgttcctttccccaggagataatgatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctagga 48478370  T
Q  101 tcctatgat 109  Q
    |||||||||    
T  48478369 tcctatgat 48478361  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36343585 - 36343692
Alignment:
Q  1 gcatttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctagga 100  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||| |||||||| || | |||||| || ||||||||| |||| |||||||||||||    
T  36343585 gcatttgttcctttgccaagcagataatgatttatatcctcacgcaacgtatgaatgtaccaaagcacatcatacttcttc-attgattgtcacctagga 36343683  T
Q  101 tcctatgat 109  Q
    |||||||||    
T  36343684 tcctatgat 36343692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 33979081 - 33978987
Alignment:
Q  17 caagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatcctatgatac 111  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||| || || |||||| ||||  |||||| ||||||||||||||||    
T  33979081 caagcagataatgatctatatcctcatgaaaagtatgaatgtatctaagcacatcatatttcttccattgaatgtcacttaggatcctatgatac 33978987  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 11347840 - 11347945
Alignment:
Q  3 atttgttcctttgccaagcaaataatgatctatatcctcatgcaaagtatgaatatatctaagcacgtcgtacttcttcaattggttgtcacctaggatc 102  Q
    ||||||||||||| |||||| || ||||||||||| || |||||| |||||||| |||||||| |  |  ||||||||| |||||||||||||||||||     
T  11347840 atttgttcctttgtcaagcagatgatgatctatattctaatgcaatgtatgaatgtatctaagtatattatacttcttccattggttgtcacctaggatt 11347939  T
Q  103 ctatga 108  Q
    ||||||    
T  11347940 ctatga 11347945  T

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