View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_high_4 (Length: 440)
Name: NF0707_high_4
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 10772590 - 10772395
Alignment:
| Q |
30 |
tatacttcctgaaatctccaaggaatacgttgttagaataaaacaaaa--tcagagtttttaaaatttttggaatttcgcaatcatattttttacaaatt |
127 |
Q |
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| T |
10772590 |
tatacttcctgaaatccccaaggaatacgttgttagaataaaaaaaaaaatcagagtttttaaaatttctgaaatattgcaatcatattttttacaaatt |
10772491 |
T |
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| Q |
128 |
tccagagcataaatcattgaaactttattaaac-aaaatcctaagaatatgtttggatgactaaatttaaataggtaacacaatttttcagggaat |
222 |
Q |
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| T |
10772490 |
tcccgagcataaatcattgaaactttattaaacaaaaatcttaagaatatgtttggatgaataaatttaaataggtaacacaatttttcagggaat |
10772395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 10772027 - 10771927
Alignment:
| Q |
270 |
atttttaacaatttgttgattatattattcgacaatgataaataatagttatattctcccttgttatattattagggatatcaaatcctcatgtaatttg |
369 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10772027 |
atttttaacaatttgttgattatattagtcgacaataataaataatagttatattctcccttgttatattattagggatatcaaatccacatgtaatttg |
10771928 |
T |
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| Q |
370 |
t |
370 |
Q |
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| T |
10771927 |
t |
10771927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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