View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_1 (Length: 931)
Name: NF0707_low_1
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 98 - 495
Target Start/End: Original strand, 52542245 - 52542642
Alignment:
| Q |
98 |
acaagtacacatatctatcaaacagnnnnnnngttatcattcgcagtttgcggaaaatagcagtatgttctaattccgcaacgctaaagcaactactcga |
197 |
Q |
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| T |
52542245 |
acaagtacacatatctatcaaacagaaacaaagttatcattcgcagtttgcggaaaatagcagtatgttctaattccgctacgctaaagtaactactcga |
52542344 |
T |
|
| Q |
198 |
cagcattttattctgaacagtgtatcttgctgcactaaatgggttatacttgacatgcaaaccttgaaccaaggtaaaaagtacttacaatgacttcatc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542345 |
cagcattttattctgaacagtgtatcttgctgcactaaatgggttatacttgacatgcaaaccttgaaccaaggtaaaaagtacttacaatgacttcatc |
52542444 |
T |
|
| Q |
298 |
aagaagttcataaacaaggacgaaattctttcgaaaagagtcttcattaagaacaccaaggtaatctttgataacacgtgcagttctatgtaaaagttcc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52542445 |
aagaagttcataaacaaggacgaaattctttcgaaaagagtcttcattaagaacaccaaggtaatctttgatgacacgtgcagttctatgtaaaagttcc |
52542544 |
T |
|
| Q |
398 |
aaaacaagagaaggagaaacattgattctagttgtagcaacaaataataacccagcaaccttcacgtggaagtagttcacaccatctacattctattc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542545 |
aaaacaagagaaggagaaacattgattctagttgtagcaacaaataataacccagcaaccttcacgtggaagtagttcacaccatctacattctattc |
52542642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 796 - 921
Target Start/End: Original strand, 52542946 - 52543071
Alignment:
| Q |
796 |
caatcgcgaaagacgatgttgtcgcctctttgagaaagtacgaagaactgagagatcatgtttgatttgctttgctttgcttgctgtgtttccttgttca |
895 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542946 |
caatcgcgaaagacgatgttgtcgcctctttgagaaagtacgaagaactgagagatcatgtttgatttgctttgctttgcttgctgtgtttccttgttca |
52543045 |
T |
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| Q |
896 |
actcaacgcattgtcttcaacctttg |
921 |
Q |
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| T |
52543046 |
actcaacgcattgtcttcaacctttg |
52543071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 584 - 677
Target Start/End: Original strand, 52542731 - 52542824
Alignment:
| Q |
584 |
caggtggagcatctccatcagcgtcttctttccagaatttaactttgcggaaaaatgtttcagcgcttcccttttggacttcaccacgatctgc |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542731 |
caggtggagcatctccatcagcgtcttctttccagaatttaactttgcggaaaaatgtttcagcgcttcccttttggacttcaccacgatctgc |
52542824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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