View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_10 (Length: 601)
Name: NF0707_low_10
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 105 - 588
Target Start/End: Original strand, 12508857 - 12509339
Alignment:
| Q |
105 |
tttggatttgagtgttgttttggaagtggagtttatattattggaatgataaatgttagtgatatgttgtagtatttatatgtgtaaagttttggaattc |
204 |
Q |
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| T |
12508857 |
tttggatttgagtgttgttttggaagtggagtttatattattggaatgataaatattggtgatatgttgtagtatttatatgtgtaaagttttggaattc |
12508956 |
T |
|
| Q |
205 |
agtgaaatatgattgcaagaatatagaatataccaatctcatcaannnnnnnatttgtgcacgtatgtcttcaagtgtcttaacatttttaatacttata |
304 |
Q |
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| T |
12508957 |
agtgaaatatgattgcaagaatatagaatatacccatctcatcaatttttttatttgtgcacgtatgtcttcaagtgtct-aacatttttaatacttata |
12509055 |
T |
|
| Q |
305 |
ttgtgtgcttgatttgtacttgcaagttgatctcccttcaacttggatgagtttatttggttagtgagaattcttccaacttggtaatatgtacactgtt |
404 |
Q |
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| T |
12509056 |
ttgtgtgcttgatttgtacttgcaagttgatctcctttcaacttggatgagtttatttggttagtgagaattcttccaacttggtaatatgtacactgtt |
12509155 |
T |
|
| Q |
405 |
ggtattttgggagaatctaaatcaatcattatattgaactaagaacaaatacacaagttcgtttggacaccgcggcttcactcacaaccttaaaatatta |
504 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
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| T |
12509156 |
ggtattttgggacaatctaaatcaatcattatattgaactaagaacaaatacacaagttagtttgaacaccgcagcttcactcacaaccttaaaatatta |
12509255 |
T |
|
| Q |
505 |
tcaatgtggccttctaatgtggtcttttaactcacacttttcacataaatattctctccctcaagtatgagactctctgcatct |
588 |
Q |
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| T |
12509256 |
tcaatgtggccttctaatgtggtcttttaactcacacttttcacataaatattctctccttcaagtatgagattctctgcatct |
12509339 |
T |
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