View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_12 (Length: 569)
Name: NF0707_low_12
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 255 - 540
Target Start/End: Complemental strand, 31205115 - 31204826
Alignment:
| Q |
255 |
ggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactgtctctaaaaccatatgagaat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31205115 |
ggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactgtctctaaaaccatatgagaat |
31205016 |
T |
|
| Q |
355 |
aaataaaagatgaaaaggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatg----gcttatatat |
450 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31205015 |
aaataaaagatgaaaagaaataaccaattaggtttccaatgattaaattgaattatttctcaatatcaaagtagtacaatgaaatggcttgcttatatat |
31204916 |
T |
|
| Q |
451 |
ttgttactagcctttatttaatagtaacgaaagacaaaaggtaatagtaacgtaaataaccaagtgagcatgattttaggcattaggtat |
540 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31204915 |
ttgttactagcctttatttaatagtaatgaaagacaaaaggtaatagtaacgtaaataaccaactgagcatgattttaggcattaggtat |
31204826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 31205259 - 31205146
Alignment:
| Q |
16 |
atcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgggatcgattcagcaacataattcatgatccatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| ||||||||||||| |
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| T |
31205259 |
atcaccttgagaaaagtgttctttcaaatcattccaaacatcaactgtattttccataaatacaatgggatcga-------------ttcatgatccatg |
31205173 |
T |
|
| Q |
116 |
aatgcacgagcatgcatattgcaacgc |
142 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
31205172 |
aatgcgcgagcatgcatattgcaacgc |
31205146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 31205143 - 31205113
Alignment:
| Q |
163 |
gcatagaccgagcccagctatggtaattgga |
193 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
31205143 |
gcatagaccgagcccagctatggtaattgga |
31205113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 150 - 450
Target Start/End: Original strand, 18436134 - 18436431
Alignment:
| Q |
150 |
cccaaagccctacgcatagaccgagcccagctatggtaattggaaccagtaagcacatgagtaattggaattgaggtaggaccatcacttggatggacat |
249 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||||||||||| |
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| T |
18436134 |
cccaaagccctacgcatagaccgagcccaactatggtaattggaaccagtaagtagaggagtaattgaaaccgaggtaggaccatcgcttggatggacat |
18436233 |
T |
|
| Q |
250 |
aatagggactcgatggatcaatcgttggggcaccctgatcattggatgctgaagcgttgttgcaaggagccatggatctcactg-tctctaaaaccatat |
348 |
Q |
| |
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|||| ||||| ||||||||||| | ||| |||||||| ||||| |||| |||||| ||||||| ||| ||||||||||| || | ||| | | ||||||| |
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| T |
18436234 |
aataaggacttgatggatcaattgctggagcaccctgctcattagatgttgaagcattgttgcgaggtgccatggatcttacggctctatgataccatat |
18436333 |
T |
|
| Q |
349 |
gagaataaataaaagatg-aaaaggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatggcttata |
447 |
Q |
| |
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|||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| |||| |
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| T |
18436334 |
gagaataagtaaaagatgaaaaagggataaccaattaggtttccaat-----aattgaattatttctcaatgtcaactcagtataatgaaaaggcatata |
18436428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 18435923 - 18436060
Alignment:
| Q |
16 |
atcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgg-------gatcgattcagcaacataattcatg |
108 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |||||||||||| || |||||||| ||| |||||||| |
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| T |
18435923 |
atcaccttgagagaagcgttctttcaaatcattccaaacatcgaccgcattttccataaatacaatggattggccaattgattcagcgacagaattcatg |
18436022 |
T |
|
| Q |
109 |
atccatgaatgcacgagcatgcatattgcaacgcttccaagc |
150 |
Q |
| |
|
|||||||| || |||| |||||||||||||| ||||||| |
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| T |
18436023 |
atccatgagtgaacga----gcatattgcaacgcgtccaagc |
18436060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 450
Target Start/End: Original strand, 18431736 - 18431836
Alignment:
| Q |
346 |
tatgagaataaataaaagatgaaaa-ggaataaccaattaggtttccaatgattgaattgaattatttctcaatatcaaagtagtacaatgaaatggctt |
444 |
Q |
| |
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||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| | |
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| T |
18431736 |
tatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaat-----aattgaattatttctcaatgtcaactcagtataatgaaaaggcat |
18431830 |
T |
|
| Q |
445 |
atatat |
450 |
Q |
| |
|
|||||| |
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|
| T |
18431831 |
atatat |
18431836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 6933123 - 6932983
Alignment:
| Q |
150 |
cccaaagccctacgcatagaccgagcccagctatggtaattggaaccagtaagcacatgagtaattggaattgaggtaggaccatcacttggatggacat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||| || |||||| |||||||| |||||||| |||| |
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| T |
6933123 |
cccaaagccctacgcatagaccgagcccaactatggtaattggatccggtaagcacaggagtaattgaaactgaggtcggaccatcgcttggatgaacat |
6933024 |
T |
|
| Q |
250 |
aatagggactcgatggatcaatcgttggggcaccctgatca |
290 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||| |
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|
| T |
6933023 |
aataaggactcagtggatcaatcgttggaacaccctgatca |
6932983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 6933331 - 6933212
Alignment:
| Q |
16 |
atcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgg-------gatcgattcagcaacataattcatg |
108 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| ||| |||||||| |
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| T |
6933331 |
atcacctagagaaaagcgttatttcaaatcattccaaacatctaccgcattttctataaatacaatggattgaccaatcgattcagtgacagaattcatg |
6933232 |
T |
|
| Q |
109 |
atccatgaatgcacgagcat |
128 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
6933231 |
atccatgaatgcacaagcat |
6933212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 30151892 - 30151775
Alignment:
| Q |
150 |
cccaaagccctacgcatagaccgagcccagctatggtaattggaaccagtaagcacatgagtaattggaattgaggtaggaccatcacttggatggacat |
249 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||| || ||||||||||||||| ||| ||||||||| |
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|
| T |
30151892 |
cccaaagccctatgcatagaccgagcccaactatggtaattggaaccagtaagtaggggagtaattgaaactgaggtaggaccatcgcttagatggacat |
30151793 |
T |
|
| Q |
250 |
aatagggactcgatggat |
267 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
30151792 |
aataaggacttgatggat |
30151775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 30151775 - 30151677
Alignment:
| Q |
307 |
tgttgcaaggagccatggatctcactg-tctctaaaaccatatgagaataaataaaagatgaaaa-ggaataaccaattaggtttccaatgattgaatt |
403 |
Q |
| |
|
|||||| ||| |||||||||||||| | ||| | | ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||| |
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|
| T |
30151775 |
tgttgcgaggtgccatggatctcacggctctatgataccatatgagaataagtaaaagatgaaaaagggataaccaattaggtttccaataattgaatt |
30151677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 30152103 - 30152036
Alignment:
| Q |
16 |
atcaccttgagaaaagtgttctttcaaatcattccaaacatcaattgcattttctgtaaatacaatgg |
83 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
30152103 |
atcaccttgagagaaacgttctttcaaatcattccaaacatcgaccgcattttccataaatacaatgg |
30152036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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