View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_13 (Length: 554)
Name: NF0707_low_13
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 31356137 - 31356689
Alignment:
| Q |
1 |
tatttctcttaaaaccaatgaatacttggtatttcattcatttccattgatcaagtcttgattgacaagaatgttagtatatatcttttttgacaagaca |
100 |
Q |
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| T |
31356137 |
tatttctcttaaaaccaatgaatacttggtatttcattcatttccgttgatcaagtcttgattgacaagaatgttagtatatatcttttttgtcaagaca |
31356236 |
T |
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| Q |
101 |
agaatgttatatttgatatcttacactttgttctgaataaaataaaactatatattatcatttattttcttcattatatgtgcattaaca--------ag |
192 |
Q |
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| T |
31356237 |
agaatgttatatttgatatcttacactttgttctgaataaaataaaactatatattatcatttattttcttcattatatgtgcattaacatggaatcaag |
31356336 |
T |
|
| Q |
193 |
agaattgattccgatttgatgtcattcatattctagaaccactttcttatcacaatggatataatgacataatcatgtggtagccaatcattcaatatat |
292 |
Q |
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| T |
31356337 |
agaattgattccgatttgatgtcattcatattctagaaccactttcttatcacaatggatataatgacataatcatgtggtagccaatcattcaatatat |
31356436 |
T |
|
| Q |
293 |
agccatgcatttttcacgactgtgtattatttacttcaagtgtaccattttaccctccctgttttctgttaagttagagttggaagttaaactcttcttt |
392 |
Q |
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| T |
31356437 |
agccatgcatttttcacgactgtgtattatttacttcaagtgtacca--ttaccctccctgttttctgttaagttagagttggaagtttaactcttcttt |
31356534 |
T |
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| Q |
393 |
tattaaagcaacgcgcaagcgttcacatattcgtgaagacatccttcgcttgatatagcaatgctc---nnnnnnnnatatatatattcttacgaaac-n |
488 |
Q |
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| T |
31356535 |
tattaaagcaacgcgcaagcgttcacatattcgtgaagacatccttcgcttgatatagcaatgctctttttttttttatatatatattcttacgaaactt |
31356634 |
T |
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| Q |
489 |
nnnnnnnncatctagaggcgtttaaggcaacaattcagtttttccaagttttcat |
543 |
Q |
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| T |
31356635 |
tttttttccatcgagaggcgtttaatgcaacaattcagtttttccaagttttcat |
31356689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 31345221 - 31345480
Alignment:
| Q |
1 |
tatttctcttaaaaccaatgaatacttggtatttcattcatttccattgatcaagtcttgattgacaagaatgttagtatatatcttttttgacaagaca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31345221 |
tatttctcttaaaatcaatgaatacttggtatttcattcatttccattgatcaagtcttgattgacaagaatgttagtatatatcttttttgtcaagaca |
31345320 |
T |
|
| Q |
101 |
agaatgttatatttgatatcttacactttgttctgaataaaataaaactatatattatcatttattttcttcattatatgtgcattaa--------caag |
192 |
Q |
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| T |
31345321 |
agaatgttatatttgatatcttacactttgttttgaataaaatagaaatatatattatcatttatttccttcattatatgtgcattaacatggaatcaag |
31345420 |
T |
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| Q |
193 |
agaattgattccgatttgatgtcattcatattctagaaccactttcttatcacaatggat |
252 |
Q |
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| T |
31345421 |
agaattaattctgattttatgtcattcatattctagaaccactttcttatcacaatggat |
31345480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 342 - 458
Target Start/End: Original strand, 31345790 - 31345909
Alignment:
| Q |
342 |
ttaccctccctgttttctgttaagttagagttggaagttaaactcttcttttattaaagcaacgcgcaagcgttcac---atattcgtgaagacatcctt |
438 |
Q |
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||||||||||||||||| |||||||||||||| ||||| ||||| | | |||||||||||||||| |||| ||||| ||||||||||||| |||||| |
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| T |
31345790 |
ttaccctccctgttttccattaagttagagttgaaagtttaactcatatgttattaaagcaacgcgtaagcattcacatgatattcgtgaagatatcctt |
31345889 |
T |
|
| Q |
439 |
cgcttgatatagcaatgctc |
458 |
Q |
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| T |
31345890 |
tgcttgatatagaaatgctc |
31345909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 536
Target Start/End: Original strand, 31345943 - 31345982
Alignment:
| Q |
497 |
catctagaggcgtttaaggcaacaattcagtttttccaag |
536 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||| |
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| T |
31345943 |
catcaagaggcgtttaatgcaacaattcagtttttccaag |
31345982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 31345535 - 31345573
Alignment:
| Q |
303 |
ttttcacgactgtgtattatttacttcaagtgtaccatt |
341 |
Q |
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| T |
31345535 |
ttttcacgactgtgtattatttacttcaactgcaccatt |
31345573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 402
Target Start/End: Original strand, 39246183 - 39246269
Alignment:
| Q |
314 |
gtgtattatttacttcaagtgtaccattttaccctccctgttttctgttaagttagagttggaagttaaactcttcttttattaaagca |
402 |
Q |
| |
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|||||||||||||| || || |||||| | ||||||||||||| |||||||||||||| | ||| |||||||||||||||||||| |
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| T |
39246183 |
gtgtattatttactcaaactgcaccattat--cctccctgttttccattaagttagagttgaatgtttgactcttcttttattaaagca |
39246269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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