View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_14 (Length: 504)
Name: NF0707_low_14
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 3363978 - 3364266
Alignment:
| Q |
16 |
aattggaatatgggtcaacgctgcatgcgctagtcacgccatgtgatgtgaagaaactttgctccattaannnnnnnnnnnn--cttcctaatatatttt |
113 |
Q |
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| T |
3363978 |
aattggaatatgggtcaacgctgcatgcgctagtcacgccatgtgatgtgaagaaactttgctccattaaacacacacacacaccttcctaatatatttt |
3364077 |
T |
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| Q |
114 |
agtacaacttgtattttcaaacttctaaataataaaagaggaaatatttttccatatataaatgtaacgtaactttatgaaacataaattaagagtcaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3364078 |
agtacaacttgtattttcaaacttctaaataataaaagaggaaatatttttccatatataaatgtaacgtaactttatgaaacat-aattaagagtcaag |
3364176 |
T |
|
| Q |
214 |
actcaagagttaagaacaaagcgtgctttgtgtcaggagaaagagcatagcatagacagaaagaaagtattggacacccagatcacacaacatag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3364177 |
actcaagagttaagaacaaagcgtgctttgtgtcaggagaaag-----agcatagacagaaagaaagtattggacacccagatcacacaacatag |
3364266 |
T |
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