View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_15 (Length: 504)
Name: NF0707_low_15
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 3363966 - 3364266
Alignment:
| Q |
4 |
ggaggagcacagaattggaatatgggtcaacgctgcatgcgctagtcacgccatgtgatgtgaagaaactttgctccattaannnnnnnnnnnn--cttc |
101 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3363966 |
ggagcagcacaaaattggaatatgggtcaacgctgcatgcgctagtcacgccatgtgatgtgaagaaactttgctccattaaacacacacacacaccttc |
3364065 |
T |
|
| Q |
102 |
ctaatatattttagtacaacttgtattttcaaacttctaaataataaaagaggaaatatttttccatatataaatgtaacgtaactttatgaaacataaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3364066 |
ctaatatattttagtacaacttgtattttcaaacttctaaataataaaagaggaaatatttttccatatataaatgtaacgtaactttatgaaacat-aa |
3364164 |
T |
|
| Q |
202 |
ttaagagtcaagactcaagagttaagaacaaagcgtgctttgtgtcaggagaaagagcatagcatagacagaaagaaagtattggacacccagatcacac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3364165 |
ttaagagtcaagactcaagagttaagaacaaagcgtgctttgtgtcaggagaaag-----agcatagacagaaagaaagtattggacacccagatcacac |
3364259 |
T |
|
| Q |
302 |
aacatag |
308 |
Q |
| |
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||||||| |
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| T |
3364260 |
aacatag |
3364266 |
T |
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