View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_19 (Length: 432)

Name: NF0707_low_19
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_19
NF0707_low_19
[»] chr5 (15 HSPs)
chr5 (49-331)||(27929776-27930058)
chr5 (49-331)||(28081783-28082062)
chr5 (129-331)||(27930468-27930670)
chr5 (129-331)||(27930264-27930466)
chr5 (129-331)||(27930672-27930874)
chr5 (129-331)||(28081171-28081373)
chr5 (129-331)||(28081375-28081577)
chr5 (129-331)||(28081579-28081781)
chr5 (129-336)||(28080962-28081169)
chr5 (129-331)||(27930060-27930262)
chr5 (129-337)||(27930876-27931084)
chr5 (64-303)||(27935865-27936101)
chr5 (273-336)||(28080899-28080962)
chr5 (273-336)||(28080836-28080899)
chr5 (273-336)||(28080773-28080836)
[»] chr8 (1 HSPs)
chr8 (7-51)||(12508857-12508901)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 49 - 331
Target Start/End: Original strand, 27929776 - 27930058
Alignment:
Q  49 aaaaccatggttcacatgaaggcttttcccctgacgatgatgataaccagcactgctcagaatatattgacaacagcagtattggtggtcagtgtcattt 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27929776 aaaaccatggttcacatgaaggcttttcccctgacgatggtgataaccagcactgctcagaatatattgacaacagcagtattggtggtcagtgtcattt 27929875  T
Q  149 attcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttcttaagcagcattttgaacca 248  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27929876 attcaacggggaggcatcgacttcccatcctggccagagaatagaaatgtttccatcttacaatacatctaatatggttcttaagcagcattttgaacca 27929975  T
Q  249 gtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 331  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27929976 ggagctgcatcgggaacgtcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 49 - 331
Target Start/End: Complemental strand, 28082062 - 28081783
Alignment:
Q  49 aaaaccatggttcacatgaaggcttttcccctgacgatgatgataaccagcactgctcagaatatattgacaacagcagtattggtggtcagtgtcattt 148  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  28082062 aaaaccatggttcacacgaaggcttttctcctgacgatggtgataaccaccactactcagaatatattgacaacaacaggattggtggtcagtgtcattt 28081963  T
Q  149 attcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttcttaagcagcattttgaacca 248  Q
    |||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28081962 attcaacgtggaggcatcgacttccca---tggccagggaatagaaatgtttccatcttacaatacatctaatatggttcttaagaagcattttgaacca 28081866  T
Q  249 gtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 331  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28081865 ggagctgcatcaggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 27930468 - 27930670
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27930468 attggtggtcaatctcatttattcaacgaggaggcatcgacttcccatcctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 27930567  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27930568 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 27930667  T
Q  329 cag 331  Q
    |||    
T  27930668 cag 27930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 27930264 - 27930466
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27930264 attggtggtcagcgtcatttattcaacagggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacaactaatatggttc 27930363  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27930364 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 27930463  T
Q  329 cag 331  Q
    |||    
T  27930464 cag 27930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 27930672 - 27930874
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27930672 attggtggtcaatctcatttattcaacgaggaggcattgacttcccatcctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 27930771  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27930772 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccaacgatcattatcatcatctaatcatttgttcaa 27930871  T
Q  329 cag 331  Q
    |||    
T  27930872 cag 27930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 129 - 331
Target Start/End: Complemental strand, 28081373 - 28081171
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28081373 attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc 28081274  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28081273 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 28081174  T
Q  329 cag 331  Q
    |||    
T  28081173 cag 28081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 129 - 331
Target Start/End: Complemental strand, 28081577 - 28081375
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28081577 attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc 28081478  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28081477 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 28081378  T
Q  329 cag 331  Q
    |||    
T  28081377 cag 28081375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 129 - 331
Target Start/End: Complemental strand, 28081781 - 28081579
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28081781 attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc 28081682  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28081681 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 28081582  T
Q  329 cag 331  Q
    |||    
T  28081581 cag 28081579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 129 - 336
Target Start/End: Complemental strand, 28081169 - 28080962
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28081169 attggtggtcaatctcatttattcaacgaggagacatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc 28081070  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  28081069 ttaagcagcattttgaaccaggagctgcatcgggaacttcactgagacattgccaatcttttgaactgcgatcattatcatcatctaatcatttgttcaa 28080970  T
Q  329 cagttcaa 336  Q
    ||||||||    
T  28080969 cagttcaa 28080962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 27930060 - 27930262
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27930060 attggtggtcaatctcatttattcaacggggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacatctaacatggttc 27930159  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |    
T  27930160 ttaagcagcattttgaaccaggagctgcatcgcgaacttcactgagacattgccaatcttttgaccagcaatcattatcatcatctaattatttgttcga 27930259  T
Q  329 cag 331  Q
    |||    
T  27930260 cag 27930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 129 - 337
Target Start/End: Original strand, 27930876 - 27931084
Alignment:
Q  129 attggtggtcagtgtcatttattcaacggggaggcatcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttc 228  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27930876 attggtggtcaatctcatttattcaacgaggaggcatcgacttcccattctggccagggaatagaaatgtttccatcttacaatacttctaatatggttc 27930975  T
Q  229 ttaagcagcattttgaaccagtagctgcatcgggaacttcactgagacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaa 328  Q
    ||||| |||||||||||| || |||  ||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27930976 ttaaggagcattttgaactaggagcaacattgggaacttcactgagatattgccaatcttttgaccaacgatcattatcatcatctaatcatttgttcaa 27931075  T
Q  329 cagttcaat 337  Q
    |||||||||    
T  27931076 cagttcaat 27931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 64 - 303
Target Start/End: Original strand, 27935865 - 27936101
Alignment:
Q  64 atgaaggcttttcccctgacgatgatgataaccagcactgctcagaatatattgacaacagcagtattggtggtcagtgtcatttattcaacggggaggc 163  Q
    ||||||||||||||| |||| ||| |||| |||  |||| |||||||||||  |||||||  || |||||||| |||||||||||| |||||||||||||    
T  27935865 atgaaggcttttcccatgacaatgttgatgaccgccactcctcagaatataaggacaaca--ag-attggtggccagtgtcatttaatcaacggggaggc 27935961  T
Q  164 atcgacttcccaacctggccagggaatagaaatgtttccatcttacaatacatctaatatggttcttaagcagcattttgaaccagtagctgcatcggga 263  Q
    ||| || |||||  |||||| |||||||||||||  ||||||||   |||| |||| ||||| ||||||  | ||||||||||||| |||| ||| ||||    
T  27935962 atcaacatcccatgctggccggggaatagaaatggctccatcttttgatacttctagtatggctcttaaagatcattttgaaccagaagctacattggga 27936061  T
Q  264 acttcactgagacattgtcaatcttttgaccagcgatcat 303  Q
    ||||||||||||||||| ||||||||||| | ||||||||    
T  27936062 acttcactgagacattgccaatcttttgagcggcgatcat 27936101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 28080962 - 28080899
Alignment:
Q  273 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaa 336  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080962 agacatcgccaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaa 28080899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 28080899 - 28080836
Alignment:
Q  273 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaa 336  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28080899 agacatcgccaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaa 28080836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 28080836 - 28080773
Alignment:
Q  273 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaa 336  Q
    |||||||| ||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  28080836 agacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaa 28080773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 12508901 - 12508857
Alignment:
Q  7 tccaacaatataaactccacttccaaaacaacactcaaatccaaa 51  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  12508901 tccaataatataaactccacttccaaaacaacactcaaatccaaa 12508857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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