View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_2 (Length: 781)
Name: NF0707_low_2
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 156 - 432
Target Start/End: Original strand, 21012164 - 21012439
Alignment:
| Q |
156 |
gttgaatcaaacagttagacaagttagggcatgtggtc-atttcattctcggtggacaagtgtgggtcagactggatgaaaggatttagaccgtcgtaaa |
254 |
Q |
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| T |
21012164 |
gttgaatcaaacagttagacgagtttgg-caggtggcccattccattctcggtggacaagtgtgggtcagaccggatgaaagaatttggaccgtcgtgaa |
21012262 |
T |
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| Q |
255 |
ctgcatccacccaaagttatttttatatatactacaacatcgttttcaatattatagggaatacaatgtcattttgatctaaaaacgttcctaggttaaa |
354 |
Q |
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| T |
21012263 |
ctgcacccatccaaagttatttttat-tataatacaacatcgttttcaatattataggaaatacagtaccattttgatctaaaaacgttcctaggttaaa |
21012361 |
T |
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| Q |
355 |
ccaaacatacactctacagaaaataacctgaattatgtccataggcgatttcagaaaattcttattggaaaaatatta |
432 |
Q |
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| T |
21012362 |
ccaaacatacactttacagaaaataacctgaattatgtccataggcgatttcagaaaattcttattggaaaaatatta |
21012439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 598 - 772
Target Start/End: Original strand, 21012799 - 21012974
Alignment:
| Q |
598 |
gctctttcttttttctcacgcatgggctgcattttgcagtaaatccaaacaattattttgtttttattattgcagaattcccaacggttcaattatatta |
697 |
Q |
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| T |
21012799 |
gctctttcttttttctcacgcatgggctgcattttgcagtaaatccaaacaattattttgtttttattattgcacaattccaaacggttcaattatatta |
21012898 |
T |
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| Q |
698 |
acatgacatgacatgagtgtcacatctgatttttcttccctggctat-aaaacaatttacaagatagtagtataat |
772 |
Q |
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| T |
21012899 |
acatgacatgacatgagtgtcacatttgatttttcttccctggctataaaaacaatttacaagatagtagtataat |
21012974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 430 - 522
Target Start/End: Original strand, 21012631 - 21012723
Alignment:
| Q |
430 |
ttaagctttagatctttgttactgtaacattgtagttggtcaaacatttccaaccttactttctaaacattgcaagattaaagtcatgcaaac |
522 |
Q |
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| T |
21012631 |
ttaagctttagatctttgttactgtaacattgtagttggtcaaacatttccaaccttactttctaaacattgcaagattaaagtcatgcaaac |
21012723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 21012099 - 21012137
Alignment:
| Q |
92 |
caagggtggacatgtgggtcgaacccggcccaaccattc |
130 |
Q |
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| T |
21012099 |
caagggtggacatgtgggtcgaacccgacccaaccattc |
21012137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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