View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_20 (Length: 426)
Name: NF0707_low_20
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 150 - 414
Target Start/End: Original strand, 9546349 - 9546616
Alignment:
| Q |
150 |
gttgttgttcatactgatcatcttgatgttgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgatatgagnnnnnn |
249 |
Q |
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| T |
9546349 |
gttgttgttcatactgatcatcttgatgctgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgatatgagaaaaaa |
9546448 |
T |
|
| Q |
250 |
ngctacttcttcttcagttgttatatccgatgaagaactcagtacagaaacagactcattctgtactgagtttttcaccggatc---atctttcttgacc |
346 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
9546449 |
agctacttcttcttcagttgttatatccgatgaagaactcagtacagaaaaagactcgttctgtactgagtttttcaccggatcattatctttcttgacc |
9546548 |
T |
|
| Q |
347 |
cgtttggatcgtggaccagttggattctttgatgattcagtttcactttctctatcttcctgaagaat |
414 |
Q |
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|||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
9546549 |
cgtttggatcgtggtccagttggattctttgacgactcagtttcacttcctctatcttcctgaagaat |
9546616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 15239352 - 15239321
Alignment:
| Q |
7 |
ctaatgttgtgatgtttgttttgagtgcttct |
38 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
15239352 |
ctaatgttgtgatgtttgttttgagtgcttct |
15239321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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