View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_26 (Length: 392)
Name: NF0707_low_26
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 24898098 - 24897868
Alignment:
| Q |
29 |
atttgtgtcacttgtcatcaatcaaaagactttcactctatcctattttaatctatctcctcctatttggctctggttagccaaagaacaataatatttc |
128 |
Q |
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| T |
24898098 |
atttgtgtcacttgtcatcaatcaaaagactttcactctatcctattttaatctatcgcctcctatttggctctggttagccaaagaacaataatatttc |
24897999 |
T |
|
| Q |
129 |
agtttagcagaaagacaatattatcgtcttctacatttatgacaagtgnnnnnnnctccaatttatttcttaaaagaaatagttacagcattaacttctt |
228 |
Q |
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| T |
24897998 |
agtttagcagaaagacaatattatcgtcttctacatttatgacaagtgtttttttctccaatttatttcttaaaagaaatagttacagcattaacttctt |
24897899 |
T |
|
| Q |
229 |
ttagattgtgactacatgtcttttttatgtc |
259 |
Q |
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| T |
24897898 |
ttagattgtgactacatgtctttttaatgtc |
24897868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 24897838 - 24897780
Alignment:
| Q |
286 |
cttttgtacatttttattcattctaaaaagtggtatgttttaatttaggcaaaattaaa |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
24897838 |
cttttgtacatttttattcattctaaaaagtgatctgttttaatttagacaaaattaaa |
24897780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 8322237 - 8322280
Alignment:
| Q |
326 |
taatttaggcaaaattaaacaattcgtcatttaacttaatttta |
369 |
Q |
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| T |
8322237 |
taatataggcaaaattacacatttcgtcatttaacttaatttta |
8322280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 13862491 - 13862533
Alignment:
| Q |
331 |
taggcaaaattaaacaattcgtcatttaacttaattttaagta |
373 |
Q |
| |
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| T |
13862491 |
taggtaaaattacacaattcgtcctttaacttaattttaagta |
13862533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 27523301 - 27523264
Alignment:
| Q |
332 |
aggcaaaattaaacaattcgtcatttaacttaatttta |
369 |
Q |
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||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
27523301 |
aggcaaaattacacaattcgtcctttaacttaatttta |
27523264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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