View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_32 (Length: 365)

Name: NF0707_low_32
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_32
NF0707_low_32
[»] chr8 (2 HSPs)
chr8 (56-144)||(40322000-40322088)
chr8 (175-365)||(40321790-40321969)
[»] chr4 (2 HSPs)
chr4 (56-144)||(31070804-31070892)
chr4 (175-238)||(31070710-31070773)
[»] chr3 (2 HSPs)
chr3 (181-239)||(32571983-32572041)
chr3 (67-142)||(32572111-32572187)
[»] chr6 (1 HSPs)
chr6 (175-232)||(14400777-14400834)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 40322088 - 40322000
Alignment:
56 gctacatggatgattgatgagaacattgagaagttatggaaaatggagagcagcgtgtagaaataatgaagttcatttctccctcattc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40322088 gctacatggatgattgatgagaacattgagaagttatggaaaatggagagcagcgtgtagaaataatgaagttcatttctccctcattc 40322000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 175 - 365
Target Start/End: Complemental strand, 40321969 - 40321790
Alignment:
175 cagccattggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatccggatccggatccggatccgtgatgtatgagcttagttnnnnn 274  Q
    |||||||||||||||||| | ||||||| |||||||||||||||| || ||||||||||||||||            |||| |||||||||||||         
40321969 cagccattggattaggggtaagatgatgacagaacaaatatgacgtaggatatgatccggatccg------------tgatatatgagcttagttaaaaa 40321882  T
275 nnnn-tgtagttctgttaatttcggcatcccttatatctcaattagttttatgtttttaataaatttgactcttcaaaaagaaagtgtgaaa 365  Q
         ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
40321881 aaaaatgtagttctgttaatttcggcatcccttatatctcaattagttttctgtttttaataaatttgactctttaaaaagaaagtgtgaaa 40321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 31070892 - 31070804
Alignment:
56 gctacatggatgattgatgagaacattgagaagttatggaaaatggagagcagcgtgtagaaataatgaagttcatttctccctcattc 144  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    
31070892 gctacatggatgattgatgagaacattgagaagttctggcaaatggaaagcagcgtgtagaaataatgaagttcatttctctctcattc 31070804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 31070773 - 31070710
Alignment:
175 cagccattggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatccggatcc 238  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||    
31070773 cagccattggattaggggcatgatgatggcagaacaaatatgacgcaggagatgatccggatcc 31070710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 32572041 - 32571983
Alignment:
181 ttggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatccggatccg 239  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
32572041 ttggattagtggcaggatgatggcagaacaaatataacgcagaagatgatcctgatccg 32571983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 32572187 - 32572111
Alignment:
67 gattgatgagaacattgagaagttatggaaaatggagagcagcgtgtag-aaataatgaagttcatttctccctcat 142  Q
    ||||||||||||||||||||| || || |||||||||||| |||| ||| ||| ||||||| || |||||| |||||    
32572187 gattgatgagaacattgagaaattctgaaaaatggagagcggcgtatagaaaaaaatgaaggtcgtttctctctcat 32572111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 14400834 - 14400777
Alignment:
175 cagccattggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatcc 232  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||| | |||||||    
14400834 cagccattggatcagcggcaggatgatggcagaacaaatatgccgcaggagatgatcc 14400777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University