View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_32 (Length: 365)
Name: NF0707_low_32
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0707_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 40322088 - 40322000
Alignment:
Q |
56 |
gctacatggatgattgatgagaacattgagaagttatggaaaatggagagcagcgtgtagaaataatgaagttcatttctccctcattc |
144 |
Q |
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T |
40322088 |
gctacatggatgattgatgagaacattgagaagttatggaaaatggagagcagcgtgtagaaataatgaagttcatttctccctcattc |
40322000 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 175 - 365
Target Start/End: Complemental strand, 40321969 - 40321790
Alignment:
Q |
175 |
cagccattggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatccggatccggatccggatccgtgatgtatgagcttagttnnnnn |
274 |
Q |
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T |
40321969 |
cagccattggattaggggtaagatgatgacagaacaaatatgacgtaggatatgatccggatccg------------tgatatatgagcttagttaaaaa |
40321882 |
T |
 |
Q |
275 |
nnnn-tgtagttctgttaatttcggcatcccttatatctcaattagttttatgtttttaataaatttgactcttcaaaaagaaagtgtgaaa |
365 |
Q |
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T |
40321881 |
aaaaatgtagttctgttaatttcggcatcccttatatctcaattagttttctgtttttaataaatttgactctttaaaaagaaagtgtgaaa |
40321790 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 31070892 - 31070804
Alignment:
Q |
56 |
gctacatggatgattgatgagaacattgagaagttatggaaaatggagagcagcgtgtagaaataatgaagttcatttctccctcattc |
144 |
Q |
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T |
31070892 |
gctacatggatgattgatgagaacattgagaagttctggcaaatggaaagcagcgtgtagaaataatgaagttcatttctctctcattc |
31070804 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 31070773 - 31070710
Alignment:
Q |
175 |
cagccattggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatccggatcc |
238 |
Q |
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T |
31070773 |
cagccattggattaggggcatgatgatggcagaacaaatatgacgcaggagatgatccggatcc |
31070710 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 32572041 - 32571983
Alignment:
Q |
181 |
ttggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatccggatccg |
239 |
Q |
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T |
32572041 |
ttggattagtggcaggatgatggcagaacaaatataacgcagaagatgatcctgatccg |
32571983 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 32572187 - 32572111
Alignment:
Q |
67 |
gattgatgagaacattgagaagttatggaaaatggagagcagcgtgtag-aaataatgaagttcatttctccctcat |
142 |
Q |
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T |
32572187 |
gattgatgagaacattgagaaattctgaaaaatggagagcggcgtatagaaaaaaatgaaggtcgtttctctctcat |
32572111 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 14400834 - 14400777
Alignment:
Q |
175 |
cagccattggattaggggcaggatgatggcagaacaaatatgacgcagaatatgatcc |
232 |
Q |
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T |
14400834 |
cagccattggatcagcggcaggatgatggcagaacaaatatgccgcaggagatgatcc |
14400777 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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