View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_4 (Length: 640)
Name: NF0707_low_4
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 30 - 625
Target Start/End: Complemental strand, 32684775 - 32684174
Alignment:
| Q |
30 |
tataggaacttgttgcattgggtgagaggattggcgatgtaagcactagtataccagagaaaacaattgaaactcaactcaagacaaaattatattcacc |
129 |
Q |
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| T |
32684775 |
tataggaacttgttgcattgggtgagaggattggcaatgtaagcactagtttaccagagaaaacaattgaaagtcaacttaagacaaaattatattcacc |
32684676 |
T |
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| Q |
130 |
ttatgacagtcaagaaatcgatgcttgcatgatatgccaggtatgatctttcagcaacaactt------gattcaatattttcaataattttgtacttga |
223 |
Q |
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| T |
32684675 |
ttatgacagtcaagaaatcgatgcttgcatgatatgccaggtatgatcgtttagcaacaagttccatttgattcaatcttttcaataattttgtacttaa |
32684576 |
T |
|
| Q |
224 |
tattttagatataaattttttagggcacttctttatttgatttactaatcaattattccttgttgcttgaataggaagaatttaagattcaagagaagat |
323 |
Q |
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| T |
32684575 |
tatttcaaatttaaattttttagggcatttctttatttaatttactaatcaattattccttgttgcttgaataggaagaatttaagattcaagagaagat |
32684476 |
T |
|
| Q |
324 |
tggaattcttcgatgcaagcatggatatcacgttgactgcataataaaatggctgatgataaaaaatatttgccctatttgcaaagtagaagctttaacg |
423 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32684475 |
tggaattcttcaatgcaagcatggatatcacgttgactgcataataaaatggctgatgataaaaaatatttgccctatttgcaaattagaagctttaacg |
32684376 |
T |
|
| Q |
424 |
gatggagagaagaataaatcccttggaatctatgatttcttcatgcatgcatatcattttattcgtgcctgtttccttcctgaataattttattttggac |
523 |
Q |
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| T |
32684375 |
gatggagagaagaataaatcccatggaatctatgatttcttcatgcatgcatatcattttattcgtgcctgtttccttcctgaataattttattttggac |
32684276 |
T |
|
| Q |
524 |
ataattcatatattgttgttgtatttttattatgcacttgatggacacccaaacttcgtatccatcaacttctgcaaattttgtcatattttggatctat |
623 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
32684275 |
ataattcatatattgttgttgtatttttattatgcacttgatggacacccaaacttcgtatccatcaacttgtgcaaactttgtcatattttggatctat |
32684176 |
T |
|
| Q |
624 |
at |
625 |
Q |
| |
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|| |
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| T |
32684175 |
at |
32684174 |
T |
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