View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_40 (Length: 285)
Name: NF0707_low_40
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 32655589 - 32655678
Alignment:
| Q |
36 |
ctattaaaataatttctgaagattttaattttgttggcttatttacagattttgtatccatattctgttctatctagggttcctctttca |
125 |
Q |
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| T |
32655589 |
ctattaaaataatttctgaagattttaattttgttggcttatttacagattttgtatccatattctgttctatctagggttcctctttca |
32655678 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 32655676 - 32655734
Alignment:
| Q |
182 |
tcaagaccagaatctatacaaactttttctttttcagcttgttggtgggttatattatt |
240 |
Q |
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| T |
32655676 |
tcaagaccagaatctatacaaactttttctttttcagcttgttggtgggttatgttatt |
32655734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 9546306 - 9546346
Alignment:
| Q |
240 |
tcgacatcttcgtcttcttcttggtcttcatattattcgac |
280 |
Q |
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| T |
9546306 |
tcgacatcttcgtcttcttcttggtcttcatcttcttcgac |
9546346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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