View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_41 (Length: 278)

Name: NF0707_low_41
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_41
NF0707_low_41
[»] chr4 (2 HSPs)
chr4 (30-266)||(3620340-3620576)
chr4 (77-132)||(51743885-51743940)
[»] chr8 (2 HSPs)
chr8 (65-132)||(3294793-3294859)
chr8 (102-132)||(11128123-11128153)
[»] chr6 (3 HSPs)
chr6 (61-128)||(33464327-33464394)
chr6 (67-129)||(7887639-7887701)
chr6 (58-128)||(33463784-33463854)
[»] chr3 (1 HSPs)
chr3 (61-132)||(18192438-18192509)
[»] chr1 (3 HSPs)
chr1 (102-132)||(31202913-31202943)
chr1 (82-132)||(51661540-51661590)
chr1 (77-133)||(32909717-32909773)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 3620576 - 3620340
Alignment:
Q  30 aaccggtcagcaggtgattgaataaaagaattggatgacatggcatgttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcattc 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  3620576 aaccggtcagcaggtgattgaataaaagaattggatgacatgacatgttttaattggagtgtgttaaaggggtgtgttagaggatatgaccctaacattc 3620477  T
Q  130 ctcctcaaataatatgaggtttagtcacaaaattaatcgctcgttttnnnnnnntttgtggctctgcctcaatggtgtagtagttattcttaccttgtta 229  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||       ||||||||| |||||||||||||||||||||||| ||||||||| |    
T  3620476 ctcctcaaataatatgaggtttagtcccaaaattaatcgctcactttaaaaaaatttgtggctatgcctcaatggtgtagtagttatttttaccttgtca 3620377  T
Q  230 ttcttaggataaaacaatcctccaaaaatttgagtat 266  Q
    || ||| ||||||||||||||||||||||||||||||    
T  3620376 tttttaagataaaacaatcctccaaaaatttgagtat 3620340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 51743940 - 51743885
Alignment:
Q  77 ttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcattcctc 132  Q
    |||||||||||||||||||||  |  |||||||||| |||||||||||||||||||    
T  51743940 ttttaattggagtgtgttaaaaaggagtgttagagggtgtgaccctagcattcctc 51743885  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 3294859 - 3294793
Alignment:
Q  65 tgacatggcatgttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcattcctc 132  Q
    |||||||||  |||||||||||||||||| |||||| ||||||||||  |||| ||||| ||||||||    
T  3294859 tgacatggctggttttaattggagtgtgtcaaaggg-tgtgttagagagtgtgtccctaacattcctc 3294793  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 132
Target Start/End: Complemental strand, 11128153 - 11128123
Alignment:
Q  102 tgtgttagaggatgtgaccctagcattcctc 132  Q
    |||||||||||||||||||||||||||||||    
T  11128153 tgtgttagaggatgtgaccctagcattcctc 11128123  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 33464327 - 33464394
Alignment:
Q  61 tggatgacatggcatgttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcatt 128  Q
    ||||||||||| || ||| ||||||| |||||||||| || ||||||||||  |||| ||||||||||    
T  33464327 tggatgacatgtcaagttataattggtgtgtgttaaaagggtgtgttagagagtgtgtccctagcatt 33464394  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 7887639 - 7887701
Alignment:
Q  67 acatggcatgttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcattc 129  Q
    ||||||| | |||| |||||||||||||||| || | ||||||| | ||||||||||||||||    
T  7887639 acatggcttattttgattggagtgtgttaaaagggtatgttagaaggtgtgaccctagcattc 7887701  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 33463854 - 33463784
Alignment:
Q  58 aattggatgacatggcatgttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcatt 128  Q
    ||||||||||| |||||  || | ||||| ||||||||||||| ||||||||||  |||| ||||||||||    
T  33463854 aattggatgacgtggcaatttattattggtgtgtgttaaaggggtgtgttagagagtgtgtccctagcatt 33463784  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 18192438 - 18192509
Alignment:
Q  61 tggatgacatggcatgttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcattcctc 132  Q
    ||||||||||||||  || | | |||||||||||| |||  ||||||||||| | |||||||||||||||||    
T  18192438 tggatgacatggcaaattgtgagtggagtgtgttagaggagtgtgttagagggtatgaccctagcattcctc 18192509  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 31202913 - 31202943
Alignment:
Q  102 tgtgttagaggatgtgaccctagcattcctc 132  Q
    |||||||||||||||||||||||||||||||    
T  31202913 tgtgttagaggatgtgaccctagcattcctc 31202943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 51661590 - 51661540
Alignment:
Q  82 attggagtgtgttaaagggatgtgttagaggatgtgaccctagcattcctc 132  Q
    |||||||||||||| |||   |||||||||| |||||||||||||||||||    
T  51661590 attggagtgtgttataggagagtgttagagggtgtgaccctagcattcctc 51661540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 32909717 - 32909773
Alignment:
Q  77 ttttaattggagtgtgttaaagggatgtgttagaggatgtgaccctagcattcctcc 133  Q
    |||| ||||| |||||||| |||  ||||||||||| |||||||||| |||||||||    
T  32909717 tttttattggggtgtgttagaggagtgtgttagagggtgtgaccctaacattcctcc 32909773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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