View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_43 (Length: 264)
Name: NF0707_low_43
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_43 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 31355898 - 31356134
Alignment:
| Q |
29 |
aaaattgaagccaagctgtttagaagagaatgattgaacaaatagtctttgaatgacactagtggttccgtnnnnnnnnnnnnnn-tgaagggaaaggta |
127 |
Q |
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| T |
31355898 |
aaaattgaagccaagctgtttagaagagaatgattgaacaaatagtctttgaatgacactagtggttccgtaaaaaaagaaaaaaatgaagggaaaggta |
31355997 |
T |
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| Q |
128 |
tagatgaatgacttctgcaacgtcgatgcttttatattatgaatgggaattggtttgccaaggtatctgtatgatcctccaattatcattgctttcaatt |
227 |
Q |
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| T |
31355998 |
tagatgaatgacttctgcaacgtcaatgcttttatattatgaatgggaattggtttgccaaggtatctgtatgatcctccaattatcattgctttcaatt |
31356097 |
T |
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| Q |
228 |
ctcatcatagacaataaagtttagcaattttatttcc |
264 |
Q |
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| T |
31356098 |
ctcatcatagacaataaagtttagcaattttatttcc |
31356134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 31345081 - 31345218
Alignment:
| Q |
114 |
tgaagggaaaggtatagatgaatgacttctgcaacgtcgatgcttttatattatgaatgggaattggtttgccaaggtatctgtatgatcctccaattat |
213 |
Q |
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| T |
31345081 |
tgaagggaaatatatagatgaatgacttctgcaacgttgatgcttttatattatgaatggga-------------ggtatatgtatgatccaccaattat |
31345167 |
T |
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| Q |
214 |
cattgctttcaattctcatcatagacaataaagtttagcaattttatttcc |
264 |
Q |
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| T |
31345168 |
cactgctttcaattctcatcatagacaataaagtttagcaattttctttcc |
31345218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 31344935 - 31344985
Alignment:
| Q |
29 |
aaaattgaagccaagctgtttagaagag--aatgattgaacaaatagtctt |
77 |
Q |
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| T |
31344935 |
aaaattgaagccatgctgtttagaagagaaaatgattggacaaatagtctt |
31344985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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